UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F38A5.6	F38A5.6	2e-127	chrIV 6,596,738	contains similarity to Pfam domain PF03114 BAR domain contains similarity to Interpro domain IPR004148 (BAR)
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	T07E3.2	T07E3.2	n/a	chrIII 6,907,721
4	C05D2.3	C05D2.3	n/a	chrIII 5,616,047	C05D2.3 generally resembles aromatic-L-amino-acid/L-histidine decarboxylases; however, its predicted protein sequence lacks six residues critical for AADC function; C05D2.3 is dispensable in mass RNAi assays.
5	C50F4.10	C50F4.10	n/a	chrV 9,530,766	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
6	F35E2.5	F35E2.5	n/a	chrI 11,742,773	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domain IPR005514 (Protein of unknown function DUF316)
7	T16G12.7	T16G12.7	n/a	chrIII 10,039,210	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
8	W06D4.3	W06D4.3	4.9999999999999996e-85	chrI 9,059,663	contains similarity to Pfam domain PF03114 BAR domain contains similarity to Interpro domain IPR004148 (BAR)
9	F36H12.5	F36H12.5	n/a	chrIV 5,267,206	contains similarity to Interpro domain IPR005819 (Histone H5)
10	F43G9.8	F43G9.8	n/a	chrI 8,618,137	contains similarity to Dugesia japonica DjFGFR1.; TR:Q8MY86
11	snf-2	F55H12.1	n/a	chrI 8,873,592	C. elegans SNF-2 protein; contains similarity to Pfam domain PF00209 Sodium:neurotransmitter symporter family contains similarity to Interpro domain IPR000175 (Sodium:neurotransmitter symporter)
12	ZK84.5	ZK84.5	n/a	chrII 6,016,343
13	T04A6.3	T04A6.3	n/a	chrIII 7,608,687	contains similarity to Interpro domain IPR006121 (Heavy metal transport/detoxification protein)
14	F54D1.1	F54D1.1	n/a	chrIV 11,262,424	contains similarity to Interpro domain IPR004087 (K Homology)
15	F44F4.10	F44F4.10	n/a	chrII 10,916,498	F44F4.1 encodes a nematode-specific sperm protein probably required for a normally high ovulation rate; F44F4.1 has no obvious non-nematode homologs, but does have a putative central coiled-coil domain, and is is paralogous to four other C. elegans proteins (B0207.11, F42G4.6, T08G11.2, and Y81G3A.1); F44F4.1(tm332) hermaphrodites show abnormal egg-laying, retaining significantly fewer eggs than wild-type (perhaps due to a lowered ovulation rate) while retaining late-stage embryos; F44F4.1 has no obvious phenotype in mass RNAi experiments, possibly because of genetic redundancy with its paralogs; F44F4.1 expression is enriched in spermatogenesis.
16	F44D12.3	F44D12.3	n/a	chrIV 10,022,456	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
17	F23C8.1	F23C8.1	n/a	chrI 2,447,555
18	T24E12.10	T24E12.10	n/a	chrII 3,770,931	contains similarity to Magnetococcus sp MJ0042 family finger-like protein.; TR:A0LDP7
19	F20H11.4	F20H11.4	n/a	chrIII 6,609,417	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
20	sfxn-1.2	F37H8.4	n/a	chrII 11,186,977	C. elegans SFXN-1.2 protein; contains similarity to Pfam domain PF03820 Tricarboxylate carrier contains similarity to Interpro domain IPR004686 (Tricarboxylate/iron carrier)
21	C53B4.2	C53B4.2	n/a	chrIV 8,966,964	contains similarity to Plasmodium vivax Sperm-specific protein Don juan, putative.; TR:A5K197
22	F35H8.4	F35H8.4	n/a	chrII 9,559,658	contains similarity to Streptococcus pyogenes Hypothetical protein.; TR:Q8P0S2
23	C09B9.4	C09B9.4	n/a	chrIV 5,032,484	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
24	C06C6.9	C06C6.9	n/a	chrV 15,996,452	contains similarity to Pfam domain PF06678 Protein of unknown function (DUF1179) contains similarity to Interpro domain IPR009564 (Protein of unknown function DUF1179)
25	D2062.7	D2062.7	n/a	chrII 2,617,140
26	F11G11.5	F11G11.5	n/a	chrII 4,858,520	contains similarity to Interpro domains IPR003267 (Small proline-rich), IPR000694 (Proline-rich region)
27	W01B6.5	W01B6.5	n/a	chrIV 10,077,459	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif)
28	D2062.6	D2062.6	n/a	chrII 2,619,582	contains similarity to Interpro domain IPR000104 (Antifreeze protein, type I)
29	K02F6.3	K02F6.3	n/a	chrII 2,547,902	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
30	F44G4.5	F44G4.5	n/a	chrII 8,999,996	contains similarity to Anabaena sp Endopeptidase Clp ATP-binding chain B.; TR:Q8YM56
31	clec-153	F10F2.8	n/a	chrIII 4,636,376	C. elegans CLEC-153 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
32	C17C3.11	C17C3.11	n/a	chrII 5,538,392	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
33	T13F2.12	T13F2.12	n/a	chrIV 9,765,986	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
34	C34D4.3	C34D4.3	n/a	chrIV 7,153,905	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
35	C05C12.5	C05C12.5	n/a	chrIV 11,260,772	contains similarity to Homo sapiens cDNA FLJ10106 fis, clone HEMBA1002569, highly similar to Homo sapiens protein associated with Myc mRNA (Fragment); ENSEMBL:ENSP00000353197
36	K10D6.3	K10D6.3	n/a	chrV 11,201,218	contains similarity to Homo sapiens HMG-BOX transcription factor BBX; ENSEMBL:ENSP00000319742
37	C37A2.3	C37A2.3	n/a	chrI 6,785,976	contains similarity to Pfam domains PF08028 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02770 (Acyl-CoA dehydrogenase, middle domain) , PF00441 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02771 (Acyl-CoA dehydrogenase, N-terminal domain) contains similarity to Interpro domains IPR013107 (Acyl-CoA dehydrogenase, type 2, C-terminal), IPR006090 (Acyl-CoA oxidase/dehydrogenase, type 1), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR006091 (Acyl-CoA dehydrogenase/oxidase, central region), IPR006089 (Acyl-CoA dehydrogenase, conserved site), IPR013764 (Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, middle and N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR006092 (Acyl-CoA dehydrogenase, N-terminal)
38	R02F2.5	R02F2.5	n/a	chrIII 5,479,799	contains similarity to Interpro domains IPR003267 (Small proline-rich), IPR000694 (Proline-rich region)
39	ZK945.7	ZK945.7	n/a	chrII 10,107,878	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IAV6
40	F07E5.4	F07E5.4	n/a	chrII 2,050,852
41	C17H12.5	C17H12.5	n/a	chrIV 6,816,742	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
42	C17C3.5	C17C3.5	n/a	chrII 5,552,099	contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
43	clec-117	B0432.12	n/a	chrII 296,649	C. elegans CLEC-117 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR000538 (Link)
44	B0496.6	B0496.6	n/a	chrIV 7,419,545	contains similarity to Pfam domain PF03134 TB2/DP1, HVA22 family contains similarity to Interpro domain IPR004345 (TB2/DP1 and HVA22 related protein)
45	H08M01.1	H08M01.1	n/a	chrIV 13,835,341	contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR003071 (Orphan nuclear receptor, HMR type)
46	clec-119	F47F6.5	n/a	chrII 1,256,978	C. elegans CLEC-119 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
47	C48E7.8	C48E7.8	n/a	chrI 6,267,364	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
48	C09F9.1	C09F9.1	n/a	chrII 14,698,971	contains similarity to Interpro domain IPR000345 (Cytochrome c heme-binding site)
49	W01D2.3	W01D2.3	n/a	chrII 14,802,515	contains similarity to Haemophilus influenzae Electron transport complex protein rnfD.; SW:RNFD_HAEIN
50	F26D2.10	F26D2.10	n/a	chrV 16,427,124	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR002110 (Ankyrin), IPR003125 (Protein of unknown function WSN), IPR001357 (BRCT)