UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F33H2.8	F33H2.8	2e-177	chrI 15,032,079	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IBJ6
2	F46F5.14	F46F5.14	n/a	chrII 800,774	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
3	R06A10.1	R06A10.1	n/a	chrI 1,087,211	contains similarity to Interpro domain IPR016196 (MFS general substrate transporter)
4	his-42	F08G2.3	n/a	chrII 13,828,401	his-42 encodes an H3 histone.
5	C04B4.1	C04B4.1	n/a	chrX 12,281,591
6	D1005.5	D1005.5	n/a	chrX 1,471,940
7	fbxb-86	T27E9.8	n/a	chrIII 13,478,975	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
8	B0205.10	B0205.10	n/a	chrI 10,709,574	contains similarity to Interpro domains IPR000893 (Luteovirus ORF6 protein), IPR000694 (Proline-rich region)
9	tbx-38	C24H11.3	n/a	chrIII 11,785,014	tbx-38 encodes a T box transcription factor; during embryonic development, tbx-38 functions redundantly with tbx-37 to effect Notch-mediated pharyngeal mesoderm induction in descendants of the ABa blastomere; in addition, tbx-38 and tbx-37 are required for proper cell fate specification of other ABa descendants, such as those that give rise to hypodermal tissue; TBX-38 expression appears to be limited to the 8 ABa descendents at the 24-cell stage of embryogenesis, with expression diminishing markedly during the next cell cycle; negative regulation of TBX-38 expression in ABp descendants depends upon Notch signaling, while negative regulation of expression in EMS descendents is likely controlled, in part, by ref-1 and unc-37, which encode bHLH and Groucho-like proteins, respectively.
10	rsr-1	F28D9.1	n/a	chrI 11,179,945	C. elegans RSR-1 protein; contains similarity to Pfam domain PF01480 PWI domain contains similarity to Interpro domains IPR002483 (Splicing factor PWI), IPR000694 (Proline-rich region), IPR005819 (Histone H5), IPR002185 (Dopamine D4 receptor)
11	B0563.1	B0563.1	n/a	chrX 9,171,819
12	C02D5.1	C02D5.1	n/a	chrIII 8,561,987	contains similarity to Pfam domains PF02770 (Acyl-CoA dehydrogenase, middle domain) , PF00441 (Acyl-CoA dehydrogenase, C-terminal domain) , PF08028 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02771 (Acyl-CoA dehydrogenase, N-terminal domain) contains similarity to Interpro domains IPR013107 (Acyl-CoA dehydrogenase, type 2, C-terminal), IPR006090 (Acyl-CoA oxidase/dehydrogenase, type 1), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR006091 (Acyl-CoA dehydrogenase/oxidase, central region), IPR006089 (Acyl-CoA dehydrogenase, conserved site), IPR013764 (Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, middle and N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR006092 (Acyl-CoA dehydrogenase, N-terminal)
13	W09G12.3	W09G12.3	n/a	chrIV 1,206,122	C. elegans probable non-coding RNA
14	twk-37	C48E7.9	n/a	chrI 6,270,306	C. elegans TWK-37 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Ion transport 2)
15	F22E5.2	F22E5.2	n/a	chrII 2,665,821
16	C44E12.1	C44E12.1	n/a	chrX 7,598,320	contains similarity to Pfam domains PF01546 (Peptidase family M20/M25/M40) , PF07687 (Peptidase dimerisation domain) contains similarity to Interpro domains IPR011650 (Peptidase M20, dimerisation), IPR002933 (Peptidase M20)
17	F59C12.3	F59C12.3	n/a	chrX 16,606,372	contains similarity to Interpro domain IPR009114 (Angiomotin)
18	T25B9.5	T25B9.5	n/a	chrIV 10,753,481	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
19	C01G5.6	C01G5.6	n/a	chrIV 6,523,650	contains similarity to Interpro domain IPR009007 (Peptidase aspartic, catalytic)
20	Y37D8A.4	Y37D8A.4	n/a	chrIII 12,837,949	contains similarity to Pfam domain PF00017 SH2 domain contains similarity to Interpro domain IPR000980 (SH2 motif)
21	srsx-38	T26E4.14	n/a	chrV 15,806,689	C. elegans SRSX-38 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
22	T27F2.2	T27F2.2	n/a	chrV 11,633,391	T27F2.2 encodes a homolog of human SIPA1/EHBP1L1 (OMIM:602180) and its paralogs.
23	grd-7	F46H5.6	n/a	chrX 7,269,472	grd-7 encodes a hedgehog-like protein, with an N-terminal DUF271 domain, a central low-complexity proline-rich domain, and a C-terminal Ground (Grd) domain; GRD-7 is expressed in three to four posterior DA motor neurons of the ventral nerve cord; the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins; GRD-7 is weakly required for normal molting; GRD-7 is also required for normal growth to full size, cuticle adhesion, locomotion, and vulval morphogenesis; all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking.
24	Y66A7A.7	Y66A7A.7	n/a	chrIII 11,629,581	contains similarity to Lactobacillus plantarum Hypothetical protein.; TR:Q88VI8
25	K05C4.3	K05C4.3	n/a	chrI 14,750,791	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
26	F29A7.8	F29A7.8	n/a	chrII 2,757,825	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
27	gcy-2	R134.2	n/a	chrII 9,509,771	gcy-2 encodes a predicted transmembrane guanylyl cyclase; as loss of gcy-2 activity via RNA-mediated interference does not result in any abnormalities, the precise role of GCY-2 in C. elegans development and/or behavior is not yet known; by sequence similarity, however, GCY-2 can be predicted to function in chemosensory signal transduction.
28	str-145	F58G4.7	n/a	chrV 8,097,583	C. elegans STR-145 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
29	str-38	T23D5.2	n/a	chrV 15,731,518	C. elegans STR-38 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
30	T02G6.4	T02G6.4	n/a	chrI 11,811,897	contains similarity to Buchnera aphidicola RpoD protein (EC 2.7.7.6).; TR:Q89AY7
31	C05C9.2	C05C9.2	n/a	chrX 11,155,280	contains similarity to White spot syndrome virus WSSV326.; TR:Q8QTD0
32	str-238	R09E12.4	n/a	chrV 768,810	C. elegans STR-238 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
33	F36D4.6	F36D4.6	n/a	chrV 9,427,160
34	Y75B8A.8	Y75B8A.8	n/a	chrIII 12,165,797	contains similarity to Plasmodium yoelii yoelii Drosophila melanogaster CG8797 gene product-related (Fragment).; TR:Q7REV3
35	math-10	C16C4.15	n/a	chrII 1,872,348	C. elegans MATH-10 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
36	F20D1.8	F20D1.8	n/a	chrX 14,996,828	contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domain IPR001507 (Endoglin/CD105 antigen)
37	srbc-82	C31A11.4	n/a	chrV 16,301,000	C. elegans SRBC-82 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
38	rbx-2	R10A10.2	n/a	chrI 6,421,299	The R10A10.2 gene encodes an ortholog of the mammalian zinc RING finger protein SAG, which protects cells from apoptosis induced by redox agents and is a component of ubiquitin-ligase (E3) complexes; mammalian SAG binds to the yeast Cul1 protein, complements the lethality of a mutation in yeast Sag, and (when bound to yeast Cul1) has ubiquitin ligase activity and promotes poly-ubiquitination of E2/Cdc34.
39	T25B9.2	T25B9.2	n/a	chrIV 10,750,930	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
40	C34F6.6	C34F6.6	n/a	chrX 11,207,733	contains similarity to Pisum sativum 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2-sdehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-sphosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase)s(KDOPS).; SW:KDSA_PEA
41	srx-9	R13D7.6	n/a	chrV 7,394,485	C. elegans SRX-9 protein; contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like)
42	F29A7.4	F29A7.4	n/a	chrII 2,750,080	contains similarity to Homo sapiens Uncharacterized protein C2orf32; ENSEMBL:ENSP00000263655
43	C01G5.8	C01G5.8	n/a	chrIV 6,550,691	contains similarity to Pfam domain PF08774 VRR-NUC domain contains similarity to Interpro domain IPR014883 (VRR-NUC)
44	C17G1.1	C17G1.1	n/a	chrX 9,919,758	contains similarity to Trypanosoma rangeli Kinetoplastid membrane protein 11.; TR:Q7YZC6
45	ZC482.4	ZC482.4	n/a	chrIII 12,766,680	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
46	tag-52	C02F12.4	n/a	chrX 3,676,290	C. elegans TAG-52 protein; contains similarity to Pfam domain PF00621 RhoGEF domain contains similarity to Interpro domains IPR000219 (Dbl homology (DH) domain), IPR001849 (Pleckstrin-like), IPR011993 (Pleckstrin homology-type)
47	tsp-18	F59G1.2	n/a	chrII 5,905,416	C. elegans TSP-18 protein; contains similarity to Interpro domain IPR008952 (Tetraspanin)
48	sri-14	M01G12.1	n/a	chrI 12,135,356	C. elegans SRI-14 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
49	F32G8.2	F32G8.2	n/a	chrV 10,552,095	contains similarity to Pfam domain PF02995 Protein of unknown function (DUF229) contains similarity to Interpro domain IPR004245 (Protein of unknown function DUF229)
50	set-30	ZC8.3	n/a	chrX 5,001,358	set-30 encodes a divergent ortholog of human SMYD1 (OMIM:606846), SMYD2 (OMIM:610663), and SYMD3 (OMIM:608783); SET-30 is paralogous to SET-10, SET-14, and SET-18; neither set-30(gk314) nor set-30(RNAi) have any obvious phenotypes.