UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	try-4	F31D4.6	1e-177	chrV 20,855,551	C. elegans TRY-4 protein; contains similarity to Pfam domains PF00089 (Trypsin) , PF03761 (Domain of unknown function (DUF316)) contains similarity to Interpro domains IPR001314 (Peptidase S1A, chymotrypsin), IPR001254 (Peptidase S1 and S6, chymotrypsin/Hap), IPR005514 (Protein of unknown function DUF316), IPR009003 (Peptidase, trypsin-like serine and cysteine)
2	D1022.5	D1022.5	n/a	chrII 7,458,058
3	C30G4.2	C30G4.2	n/a	chrX 17,044,626	contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold)
4	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
5	ZC196.8	ZC196.8	n/a	chrV 8,721,706	contains similarity to Pfam domain PF04789 Protein of unknown function (DUF621) contains similarity to Interpro domain IPR006874 (Protein of unknown function DUF621)
6	ast-1	T08H4.3	n/a	chrII 4,131,358	ast-1 encodes a novel ETS-box transcription factor; AST-1 is required for the proper navigation of some interneuron axons to their targets, for differentiation of the ventral cord pioneer neuron AVG, and for pharyngeal morphogenesis; AST-1 is transiently expressed in many head neurons late in their differentiation and axon outgrowth, and in a few pharyngeal cells; AST-1 is at first nuclear, but then relocates to spots in cell bodies and even neuronal processes; hypomorphic ast-1 mutants have axons extending laterally, and crossing over from the right axon tract to the left axon bundle; null ast-1(hd92) mutants are inviable, failing to attach a working pharynx to their cuticle during development and then starving as L1 larvae; behaviorally, hypomorphic ast-1 animals are at least superficially normal, indicating that the ventral nerve cord can tolerate at least some miswiring; AST-1 regulates odr-2 expression, while ast-1 expression is itself regulated by lin-11.
7	scl-27	ZK6.3	n/a	chrV 400,930	C. elegans SCL-27 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR001283 (Allergen V5/Tpx-1 related)
8	K07A1.7	K07A1.7	n/a	chrI 9,597,007	contains similarity to Drosophila melanogaster Flybase gene name is hdc-PC;; FLYBASE:CG15532
9	ZC416.2	ZC416.2	n/a	chrIV 3,634,511	n/a
10	F19B10.3	F19B10.3	n/a	chrII 3,664,939
11	srz-95	Y102A5C.33	n/a	chrV 16,992,941	C. elegans SRZ-95 protein ;
12	rnt-1	B0414.2	n/a	chrI 5,782,356	rnt-1 encodes a transcription factor that is the sole C. elegans member of the RUNX family of transcriptional regulators; rnt-1 activity is required for several developmental processes, including regulation of hypodermal seam cell proliferation and proper development of the male tail; RNT-1 can physically interact with SMA-4 and regulates, either directly or indirectly, expression of tlp-1 and cki-1, which encode a C2H2 zinc finger and CDK inhibitor, respectively; RNT-1::GFP reporter fusions are reportedly expressed in the nuclei of hypodermal seam cells, intestinal cells, body wall muscles, and, in males, cells derived from the V5, V6 and T lineages that give rise to the sensory rays.
13	H35N09.1	H35N09.1	n/a	chrX 8,607,362
14	srz-79	C09G12.2	n/a	chrIV 3,494,391	C. elegans SRZ-79 protein ;
15	F58G4.3	F58G4.3	n/a	chrV 8,105,172	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domain IPR003677 (Protein of unknown function DUF148)
16	T02D1.4	T02D1.4	n/a	chrIV 17,401,011	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
17	K11D12.9	K11D12.9	n/a	chrV 5,044,302	contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)
18	T01G6.10	T01G6.10	n/a	chrV 502,683	contains similarity to Pfam domains PF01370 (NAD dependent epimerase/dehydratase family) , PF00106 (short chain dehydrogenase) contains similarity to Interpro domains IPR002424 (Insect alcohol dehydrogenase family), IPR001509 (NAD-dependent epimerase/dehydratase), IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding), IPR001100 (Pyridine nucleotide-disulphide oxidoreductase, class I)
19	str-88	R08H2.2	n/a	chrV 15,383,115	C. elegans STR-88 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
20	ceh-28	K03A11.3	n/a	chrX 13,075,231	A homeobox protein of the NK-2 family; it is expressed in a single pharyngeal neuron, M4.
21	B0507.5	B0507.5	n/a	chrV 8,754,261
22	F15H10.6	F15H10.6	n/a	chrV 10,411,166	contains similarity to Mycoplasma pneumoniae Oligopeptide transport ATP-binding protein oppF.; SW:OPPF_MYCPN
23	K07A9.3	K07A9.3	n/a	chrIV 1,835,383	contains similarity to Interpro domain IPR001736 (Phospholipase D/Transphosphatidylase)
24	ZK896.9	ZK896.9	n/a	chrIV 12,857,434	ZK896.9 encodes a putative transporter of UDP-N-acetylglucosamine (UDP-GlcNAc) and UDP-N-acetylgalactosamine (UDP-GalNAc), orthologous to human SLC35A3 (OMIM:605632) and paralogous to C03H5.2 and SRF-3; ZK896.9 has no obvious function in RNAi assays, but this could reflect genetic redundancy with its paralogs.
25	twk-23	F19D8.1	n/a	chrX 13,819,543	twk-23 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains; the precise role of TWK-23 in C. elegans development and/or behavior is not yet known, however TWK-23 may function redundantly with other TWK channels; TWK-23 is expressed in neurons, muscle, the posterior intestine, and diffusely in many other tissues.
26	srg-15	C34C6.1	n/a	chrII 8,709,673	C. elegans SRG-15 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
27	srt-68	B0238.3	n/a	chrV 5,251,344	C. elegans SRT-68 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
28	F55C9.6	F55C9.6	n/a	chrV 19,295,191	contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domain IPR003366 (CUB-like region)
29	sre-31	F57G9.1	n/a	chrII 12,407,787	C. elegans SRE-31 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domains IPR004151 (C. elegans Sre G protein-coupled chemoreceptor), IPR000366 (Fungal pheromone mating factor STE2 GPCR), IPR000293 (Channel forming colicin, C-terminal cytotoxic)
30	ZK455.5	ZK455.5	n/a	chrX 11,325,637	contains similarity to Pfam domain PF01066 CDP-alcohol phosphatidyltransferase contains similarity to Interpro domains IPR014472 (Choline/ethanolaminephosphotransferase), IPR000462 (CDP-alcohol phosphatidyltransferase)
31	srh-4	K09D9.6	n/a	chrV 4,011,203	C. elegans SRH-4 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR000832 (GPCR, family 2, secretin-like)
32	C43H6.6	C43H6.6	n/a	chrX 2,397,074	contains similarity to Pfam domains PF00059 (Lectin C-type domain) , PF00431 (CUB domain) contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
33	K01A11.1	K01A11.1	n/a	chrIII 3,429,872	contains similarity to Dictyostelium discoideum PAXILLIN-like protein.; TR:Q8MML5
34	srx-66	K07C6.9	n/a	chrV 3,920,192	C. elegans SRX-66 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
35	W04D12.1	W04D12.1	n/a	chrIII 5,837,006
36	B0302.2	B0302.2	n/a	chrX 17,178,681
37	srx-128	F55B12.7	n/a	chrV 13,838,056	C. elegans SRX-128 protein ;
38	C07A9.10	C07A9.10	n/a	chrIII 9,685,849	contains similarity to Pfam domain: PF00442 (Ubiquitin carboxyl-terminal hydrolases family 2), Score=28.0, E-value=1e-05, N=1
39	srd-32	T19H12.5	n/a	chrV 4,867,995	C. elegans SRD-32 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR003945 (NADH-plastoquinone oxidoreductase, chain 5)
40	F14H3.9	F14H3.9	n/a	chrV 16,068,329	contains similarity to Pfam domain PF03236 (Domain of unknown function DUF263)
41	fbxb-6	F07E5.1	n/a	chrII 2,066,717	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
42	srg-55	W09D12.2	n/a	chrV 14,927,504	C. elegans SRG-55 protein ;
43	Y11D7A.10	Y11D7A.10	n/a	chrIV 9,259,330	contains similarity to Coniophora arida ATP synthase subunit 6 (EC 3.6.3.14) (ATP synthase A chain)s(Fragment).; TR:Q9XLN6
44	ZK757.1	ZK757.1	n/a	chrIII 9,869,795	contains similarity to Pfam domain PF06681 Protein of unknown function (DUF1182) contains similarity to Interpro domains IPR000883 (Cytochrome c oxidase, subunit I), IPR010601 (Protein of unknown function DUF1182)
45	nhr-241	Y69H2.8	n/a	chrV 18,700,186	C. elegans NHR-241 protein
46	T16H12.1	T16H12.1	n/a	chrIII 10,084,745	contains similarity to Human papillomavirus type 70 E7 protein.; SW:VE7_HPV70
47	str-23	C55A1.5	n/a	chrV 15,645,650	C. elegans STR-23 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
48	K09H11.6	K09H11.6	n/a	chrV 5,735,411
49	str-94	F07C3.8	n/a	chrV 9,248,642	C. elegans STR-94 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR005384 (Duffy antigen/chemokine receptor)
50	sre-39	F10G7.7	n/a	chrII 4,688,304	C. elegans SRE-39 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)