UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F28A10.8	F28A10.8	2e-114	chrII 838,145	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
2	T06C12.12	T06C12.12	n/a	chrV 15,892,264	contains similarity to Pyrococcus horikoshii Hypothetical protein PH0933.; TR:O58684
3	Y8A9A.4	Y8A9A.4	n/a	chrII 3,791,066
4	T24D5.1	T24D5.1	n/a	chrX 12,575,561	contains similarity to Melanoplus sanguinipes entomopoxvirus ORF MSV156 hypothetical protein.; TR:Q9YVT6
5	C55A1.7	C55A1.7	n/a	chrV 15,647,283	contains similarity to Escherichia coli TolA protein.; SW:TOLA_ECOLI
6	srh-100	C46E10.10	n/a	chrII 3,713,935	C. elegans SRH-100 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
7	K06A9.2	K06A9.2	n/a	chrX 1,538,348	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
8	ilys-4	C55F2.2	n/a	chrIV 7,896,569	C. elegans ILYS-4 protein; contains similarity to Pfam domain PF05497 Destabilase contains similarity to Interpro domain IPR008597 (Destabilase)
9	D2062.1	D2062.1	n/a	chrII 2,632,264	contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related)
10	F08F3.1	F08F3.1	n/a	chrV 5,447,387
11	F35D2.4	F35D2.4	n/a	chrII 7,581,981	contains similarity to Interpro domain IPR009030 (Growth factor, receptor)
12	F44A2.7	F44A2.7	n/a	chrV 9,322,227
13	C17E4.1	C17E4.1	n/a	chrI 9,409,217	contains similarity to Homo sapiens Putative uncharacterized protein (Fragment); ENSEMBL:ENSP00000333119
14	F56C4.2	F56C4.2	n/a	chrIV 10,642,026	contains similarity to Oryza sativa DNA binding protein S1FA.; SW:S1FA_ORYSA
15	C30F2.2	C30F2.2	n/a	chrX 16,080,929	contains similarity to Interpro domain IPR001841 (Zinc finger, RING-type)
16	C07G3.8	C07G3.8	n/a	chrV 3,497,698	contains similarity to Pfam domain PF03236 Domain of unknown function DUF263 contains similarity to Interpro domain IPR004920 (Protein of unknown function DUF263)
17	srd-36	R04D3.6	n/a	chrX 13,294,014	C. elegans SRD-36 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
18	R04F11.1	R04F11.1	n/a	chrV 12,309,572	R04F11.1 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; R04F11.1 is worm-specific, with obvious homologs only in C. elegans; R04F11.1 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
19	C17B7.9	C17B7.9	n/a	chrV 3,331,512	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
20	F01E11.3	F01E11.3	n/a	chrX 6,975,202
21	T24D5.3	T24D5.3	n/a	chrX 12,581,565	contains similarity to Homo sapiens hypothetical protein DKFZp434P055; ENSEMBL:ENSP00000272832
22	H28G03.3	H28G03.3	n/a	chrX 5,221,191
23	K03H9.1	K03H9.1	n/a	chrII 6,431,519
24	F36H5.8	F36H5.8	n/a	chrII 1,749,990	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
25	Y75B8A.33	Y75B8A.33	n/a	chrIII 12,364,496
26	F53B1.3	F53B1.3	n/a	chrX 2,106,394
27	Y47D3B.3	Y47D3B.3	n/a	chrIII 11,400,137	contains similarity to Homo sapiens Low-density lipoprotein receptor-related protein 2 precursor; ENSEMBL:ENSP00000263816
28	F42A6.2	F42A6.2	n/a	chrIV 3,341,612
29	clec-45	F07C4.2	n/a	chrV 7,638,344	C. elegans CLEC-45 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
30	Y43F8C.11	Y43F8C.11	n/a	chrV 19,670,774	contains similarity to Mus sp Interleukin-3 receptor beta subunit (Fragment).; TR:Q64130
31	npr-9	ZK455.3	n/a	chrX 11,330,259	C. elegans NPR-9 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002286 (P2 purinoceptor), IPR001556 (Bombesin receptor), IPR009144 (Thyrotropin-releasing hormone receptor), IPR000586 (Somatostatin receptor), IPR000405 (Galanin receptor), IPR000611 (Neuropeptide Y receptor), IPR000276 (GPCR, rhodopsin-like)
32	F11A5.13	F11A5.13	n/a	chrV 16,226,353	contains similarity to Clostridium acetobutylicum MDR-type permease.; TR:Q97D15
33	F49D11.2	F49D11.2	n/a	chrI 10,922,443	contains similarity to Pfam domain PF07735 F-box associated contains similarity to Interpro domain IPR012885 (F-box associated type 2)
34	srg-14	F26B1.6	n/a	chrI 6,313,673	C. elegans SRG-14 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
35	tag-194	W02D3.6	n/a	chrI 6,730,509	C. elegans TAG-194 protein; contains similarity to Pfam domain PF00153 Mitochondrial carrier protein contains similarity to Interpro domains IPR002067 (Mitochondrial carrier protein), IPR002030 (Mitochondrial brown fat uncoupling protein), IPR001993 (Mitochondrial substrate carrier), IPR002113 (Adenine nucleotide translocator 1)
36	F10G2.7	F10G2.7	n/a	chrV 7,335,453	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domain IPR009658 (Protein of unknown function DUF1248)
37	sro-1	D1022.6	n/a	chrII 7,461,799	C. elegans SRO-1 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
38	C31A11.1	C31A11.1	n/a	chrV 16,294,149	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
39	srd-71	C13B7.4	n/a	chrV 2,424,746	C. elegans SRD-71 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR001614 (Myelin proteolipid protein PLP), IPR003002 (7TM chemoreceptor, subfamily 1), IPR002016 (Haem peroxidase, plant/fungal/bacterial)
40	pqn-97	ZK488.10	n/a	chrV 609,465	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
41	grl-8	ZC487.5	n/a	chrV 6,732,495	grl-8 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground-like (Grl) domain; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
42	T22B2.2	T22B2.2	n/a	chrX 3,922,438
43	T23G4.2	T23G4.2	n/a	chrIV 13,688,527	contains similarity to Interpro domain IPR001984 (Peptidase S16, Lon protease)
44	T07D10.1	T07D10.1	n/a	chrI 12,604,999	contains similarity to Strongylocentrotus purpuratus Katanin p80 subunit.; TR:O61585
45	aqp-6	C32C4.2	n/a	chrV 10,651,251	apq-6 encodes an aquaporin whose expression in Xenopus oocytes increases water permeability five- to seven-fold; aqp-6 has no function in mass RNAi assays, perhaps reflecting genetic redundancy with its paralogs AQP-4 and AQP-5; AQP-6 is expressed in the cilia and cell bodies of IL1 sensory neurons; AQP-6 is orthologous to human AQP8 (OMIM:603750).
46	srt-25	C16D9.7	n/a	chrV 8,257,371	C. elegans SRT-25 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
47	Y7A5A.3	Y7A5A.3	n/a	chrX 15,783,069
48	lpr-2	T12A7.5	n/a	chrIV 11,783,102	C. elegans LPR-2 protein; contains similarity to Interpro domains IPR012674 (Calycin), IPR011038 (Calycin-like), IPR002345 (Lipocalin)
49	W03A5.1	W03A5.1	n/a	chrIII 5,410,601	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR001452 (Src homology-3), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR008266 (Tyrosine protein kinase, active site)
50	F49E11.8	F49E11.8	n/a	chrIV 13,055,531	contains similarity to Neisseria meningitidis Preprotein translocase SecA subunit.; TR:Q9JTK7