UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F26F4.8	F26F4.8	1e-179	chrIII 4,904,678	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
2	Y43F8C.9	Y43F8C.9	n/a	chrV 19,646,679	contains similarity to Dictyostelium discoideum Myb-like protein.; SW:P34127
3	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
4	F41F3.1	F41F3.1	n/a	chrV 4,655,174
5	W05B5.1	W05B5.1	n/a	chrI 13,043,893	contains similarity to Saccharomyces cerevisiae Homolog of human WASP, proline-rich protein; SGD:YOR181W
6	W04A4.2	W04A4.2	n/a	chrI 13,683,368	contains similarity to Homo sapiens Hypothetical protein FLJ90033; TR:Q8N2R3
7	Y39E4A.1	Y39E4A.1	n/a	chrIII 12,951,765	contains similarity to Mus musculus Nuclear protein ZAP3.; SW:ZAP3_MOUSE
8	rmd-5	T23B3.3	n/a	chrI 6,711,598	C. elegans RMD-5 protein ; contains similarity to Xenopus laevis Protein FAM82C.; SW:Q5EAU9
9	trf-1	F45G2.6	n/a	chrIII 13,431,808	The trf-1 gene encodes a protein with a meprin-associated Traf homology (MATH) domain that may be involved in apoptosis.
10	K02F6.1	K02F6.1	n/a	chrII 2,555,138	contains similarity to Pfam domain PF00098 Zinc knuckle contains similarity to Interpro domains IPR009007 (Peptidase aspartic, catalytic), IPR013084 (Zinc finger, CCHC retroviral-type), IPR001969 (Peptidase aspartic, active site), IPR001878 (Zinc finger, CCHC-type)
11	scl-23	B0545.3	n/a	chrIV 88,065	C. elegans SCL-23 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related), IPR014044 (SCP-like extracellular)
12	C44F1.2	C44F1.2	n/a	chrIII 3,769,375	contains similarity to Pfam domains PF01342 (SAND domain) , PF02178 (AT hook motif) contains similarity to Interpro domains IPR000637 (HMG-I and HMG-Y, DNA-binding), IPR010919 (SAND-like), IPR000770 (SAND)
13	R01E6.5	R01E6.5	n/a	chrX 13,537,467	contains similarity to Interpro domain IPR002952 (Eggshell protein)
14	K02A11.2	K02A11.2	n/a	chrI 9,745,095	contains similarity to Saccharomyces cerevisiae Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis; SGD:YGR159C
15	F26H9.8	F26H9.8	n/a	chrI 9,322,465	contains similarity to Pfam domains PF01501 (Glycosyl transferase family 8) , PF06427 (UDP-glucose:Glycoprotein Glucosyltransferase) contains similarity to Interpro domains IPR000886 (Endoplasmic reticulum, targeting sequence), IPR009448 (UDP-glucose:Glycoprotein Glucosyltransferase), IPR002495 (Glycosyl transferase, family 8)
16	C48E7.8	C48E7.8	n/a	chrI 6,267,364	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
17	Y51A2D.18	Y51A2D.18	n/a	chrV 18,484,174	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR001991 (Sodium:dicarboxylate symporter), IPR011701 (Major facilitator superfamily MFS-1), IPR005829 (Sugar transporter, conserved site), IPR005828 (General substrate transporter), IPR003663 (Sugar transporter), IPR016196 (MFS general substrate transporter)
18	M70.4	M70.4	n/a	chrIV 2,258,333	M70.4 is orthologous to human O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE (FLJ20277; OMIM:606822), which when mutated leads to muscle-eye-brain disease.
19	scrm-8	K08D10.7	n/a	chrIV 4,165,432	scrm-8 encodes a putative phospholipid scramblase required for normally short lifespan; SCRM-8 is homologous to human PLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1).
20	F47B7.4	F47B7.4	n/a	chrX 3,765,997	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
21	Y7A5A.8	Y7A5A.8	n/a	chrX 15,823,201	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IL30
22	F25B3.2	F25B3.2	n/a	chrV 9,578,510	contains similarity to Lactococcus lactis Oligopeptide transport system permease protein oppC.; SW:OPPC_LACLA
23	srg-46	F32H5.5	n/a	chrV 13,364,203	C. elegans SRG-46 protein ;
24	Y48E1C.3	Y48E1C.3	n/a	chrII 13,439,410	contains similarity to Pfam domain PF00566 TBC domain contains similarity to Interpro domain IPR000195 (RabGAP/TBC)
25	rnh-1.1	ZK1290.6	n/a	chrII 7,526,915	C. elegans RNH-1.1 protein; contains similarity to Pfam domain PF00075 RNase H contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold), IPR002156 (Ribonuclease H)
26	F59B2.5	F59B2.5	n/a	chrIII 9,001,107	contains similarity to Pfam domain PF01399 PCI domain contains similarity to Interpro domains IPR013143 (PCI/PINT associated module), IPR011991 (Winged helix repressor DNA-binding), IPR000717 (Proteasome component region PCI)
27	C17G10.3	C17G10.3	n/a	chrII 5,583,865
28	F54H12.5	F54H12.5	n/a	chrIII 7,971,111	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
29	Y45F3A.1	Y45F3A.1	n/a	chrIII 10,559,860	contains similarity to Homo sapiens Tropomyosin 2; ENSEMBL:ENSP00000367550
30	ttr-6	T28B4.3	n/a	chrX 6,596,773	C. elegans TTR-6 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
31	F22D6.9	F22D6.9	n/a	chrI 7,100,795	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
32	str-86	F59E11.14	n/a	chrV 8,983,013	C. elegans STR-86 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
33	acl-13	F08G5.2	n/a	chrIV 12,411,312	C. elegans ACL-13 protein; contains similarity to Pfam domain PF01553 Acyltransferase contains similarity to Interpro domain IPR002123 (Phospholipid/glycerol acyltransferase)
34	F14D2.9	F14D2.9	n/a	chrII 3,354,397	contains similarity to Xenopus laevis Putative uncharacterized protein.; TR:Q08AY0
35	F18A12.4	F18A12.4	n/a	chrII 3,405,348	F18A12.4 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; F18A12.4 has no clear orthologs in other organisms.
36	C10G11.10	C10G11.10	n/a	chrI 6,305,695
37	try-6	F48A9.3	n/a	chrI 6,586,594	C. elegans TRY-6 protein; contains similarity to Pfam domains PF00089 (Trypsin) , PF03761 (Domain of unknown function (DUF316)) contains similarity to Interpro domains IPR001314 (Peptidase S1A, chymotrypsin), IPR001254 (Peptidase S1 and S6, chymotrypsin/Hap), IPR005514 (Protein of unknown function DUF316), IPR009003 (Peptidase, trypsin-like serine and cysteine)
38	F47B3.4	F47B3.4	n/a	chrI 3,961,620	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR006077 (Vinculin/alpha-catenin), IPR003267 (Small proline-rich), IPR004296 (Protein of unknown function DUF236), IPR000694 (Proline-rich region), IPR001399 (VP6 blue-tongue virus inner capsid protein), IPR000079 (High mobility group protein HMG14 and HMG17)
39	Y17G7B.19	Y17G7B.19	n/a	chrII 12,110,327	contains similarity to Pfam domain PF01666 (DX module)
40	H08M01.1	H08M01.1	n/a	chrIV 13,835,341	contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR003071 (Orphan nuclear receptor, HMR type)
41	C06C3.9	C06C3.9	n/a	chrII 9,377,271
42	K11C4.2	K11C4.2	n/a	chrV 6,895,906	contains similarity to Pfam domain PF03006 Haemolysin-III related contains similarity to Interpro domain IPR004254 (Hly-III related proteins)
43	F52F10.3	F52F10.3	n/a	chrV 1,540,095	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
44	C03B1.6	C03B1.6	n/a	chrX 6,350,637
45	F21C3.6	F21C3.6	n/a	chrI 7,284,859	contains similarity to Homo sapiens Isoform 1 of Caldesmon; ENSEMBL:ENSP00000354826
46	K10C9.7	K10C9.7	n/a	chrV 1,066,687
47	nas-5	T23H4.3	n/a	chrI 9,887,167	nas-5 encodes an astacin-like metalloprotease; loss of nas-5 activity in an RNAi hypersensitive strain results in axon guidance defects, including a failure of DD/VD motoneuron commissures to reach the dorsal cord, defasciculation of the dorsal nerve cord, and midline crossing defects in the ventral nerve cord.
48	F40G9.5	F40G9.5	n/a	chrIII 184,128
49	W01D2.3	W01D2.3	n/a	chrII 14,802,515	contains similarity to Haemophilus influenzae Electron transport complex protein rnfD.; SW:RNFD_HAEIN
50	C28A5.6	C28A5.6	n/a	chrIII 4,426,610	contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)