UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	srw-29	F26D2.11	0	chrV 16,423,776	C. elegans SRW-29 protein; contains similarity to Pfam domain PF06976 Protein of unknown function (DUF1300) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR010726 (Protein of unknown function DUF1300), IPR000276 (GPCR, rhodopsin-like)
2	T10H10.2	T10H10.2	n/a	chrX 2,296,444	contains similarity to Pfam domains PF04777 (Erv1 / Alr family) , PF00085 (Thioredoxin) contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR006863 (Erv1/Alr), IPR013766 (Thioredoxin domain), IPR006662 (Thioredoxin-related)
3	JC8.5	JC8.5	n/a	chrIV 13,245,638	contains similarity to Pfam domain PF04442 Cytochrome c oxidase assembly protein CtaG / Cox11 contains similarity to Interpro domain IPR007533 (Cytochrome c oxidase assembly protein CtaG/Cox11)
4	T22F7.3	T22F7.3	n/a	chrIII 520,622	contains similarity to Pfam domains PF01683 (EB module) , PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain) (5)contains similarity to Interpro domains IPR002223 (Proteinase inhibitor I2, Kunitz metazoa), IPR006150 (Cysteine-rich repeat), IPR006149 (Nematode-specific EB region)
5	sqv-7	C52E12.3	n/a	chrII 7,011,690	The sqv-7 gene encodes a nucleotide-sugar transporter of the Golgi membrane, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; SQV-7 promotes glycosaminoglycan biosynthesis by translocating UDP-glucuronic acid, UDP-N-acetylgalactosamine, and UDP-galactose into the lumen of the Golgi apparatus; SQV-7 is biochemically active when transgenically expressed in yeast or mammalian Golgi membranes; the common requirement for SQV-7 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.
6	F19D8.2	F19D8.2	n/a	chrX 13,835,397	contains similarity to Homo sapiens Splice isoform 1 of Q9UMN6 Myeloid/lymphoid or mixed-lineage leukemia protein 4; ENSEMBL:ENSP00000222270
7	sra-25	T26E3.9	n/a	chrI 12,687,150	C. elegans SRA-25 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR000344 (Nematode chemoreceptor, Sra)
8	F14B6.4	F14B6.4	n/a	chrI 12,237,119	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
9	clec-238	Y102A5C.17	n/a	chrV 16,952,706	C. elegans CLEC-238 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
10	sqv-8	ZK1307.5	n/a	chrII 9,648,550	The sqv-8 gene encodes a glucuronyl transferase, biochemically active in vitro, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; SQV-8 is homologous to three distinct glucuronyl transferases (GlcAT-I, GlcAT-P and GlcAT-D) that play a role in the synthesis of different glycoconjugates; the common requirement for SQV-8 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.
11	C10A4.6	C10A4.6	n/a	chrX 7,391,386
12	clec-246	F16H6.2	n/a	chrV 18,190,268	C. elegans CLEC-246 protein ;
13	clec-235	F36D3.10	n/a	chrV 16,531,589	C. elegans CLEC-235 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
14	W05H7.2	W05H7.2	n/a	chrX 1,435,503
15	C26B2.7	C26B2.7	n/a	chrIV 8,016,527
16	W02D7.6	W02D7.6	n/a	chrV 8,300,526	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
17	srd-25	F07C4.4	n/a	chrV 7,632,583	C. elegans SRD-25 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
18	K08D9.1	K08D9.1	n/a	chrV 3,236,735
19	tag-294	C54H2.3	n/a	chrX 5,761,796	C. elegans TAG-294 protein; contains similarity to Pfam domain PF00641 Zn-finger in Ran binding protein and others contains similarity to Interpro domain IPR001876 (Zinc finger, RanBP2-type)
20	fbxa-120	C33E10.2	n/a	chrX 17,303,205	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
21	C34D4.13	C34D4.13	n/a	chrIV 7,133,813
22	scl-19	ZK384.1	n/a	chrV 18,732,354	C. elegans SCL-19 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related)
23	glb-20	R01E6.6	n/a	chrX 13,554,276	glb-20 encodes a globin; glb-20 transcription is higher in L3 and dauers than in young adults; glb-20 has no obvious function in mass RNAi assays.
24	arx-2	K07C5.1	n/a	chrV 10,336,882	arx-2 encodes the C. elegans ortholog of the Arp2 subunit of the actin-related protein (Arp)2/3 complex.
25	sra-33	B0304.6	n/a	chrII 4,535,979	C. elegans SRA-33 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
26	fbxa-104	T06E6.13	n/a	chrV 15,422,084	C. elegans FBXA-104 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
27	B0280.7	B0280.7	n/a	chrIII 7,111,015
28	F16H6.8	F16H6.8	n/a	chrV 18,214,941	contains similarity to Mycoplasma capricolum CLPA/CLPB family (Fragment).; TR:Q49064
29	Y38H8A.5	Y38H8A.5	n/a	chrIV 13,467,731	The Y38H8A.5 gene encodes a homolog of the human gene ZNF195 (or p57KIP2), which when mutated leads to Beckwith-Wiedemann syndrome (OMIM:130650).
30	gpa-13	F18E2.5	n/a	chrV 12,753,806	gpa-13 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases; it is expressed in ADF, ASH, AWC, PHA, and PHB.
31	F29C12.3	F29C12.3	n/a	chrII 13,107,433	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
32	sra-8	AH6.12	n/a	chrII 9,538,328	C. elegans SRA-8 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
33	srz-47	Y68A4A.2	n/a	chrV 17,191,554	C. elegans SRZ-47 protein ;
34	str-225	C07G3.6	n/a	chrV 3,508,534	C. elegans STR-225 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001307 (Thiosulphate sulphurtransferase, conserved site)
35	vab-15	R07B1.1	n/a	chrX 9,848,439	The vab-15 gene encodes a msh-like homeobox gene that appears required for production of touch cell precursors, and that is orthologous to the human gene MSH HOMEO BOX HOMOLOG 1 (MSX1; OMIM:142983) which when mutated leads to disease.
36	ZC266.2	ZC266.2	n/a	chrV 4,696,862
37	F40E3.6	F40E3.6	n/a	chrI 2,651,225
38	F38E1.11	F38E1.11	n/a	chrV 8,379,393
39	C53D6.6	C53D6.6	n/a	chrIV 9,030,151	contains similarity to Pfam domain PF05699 hAT family dimerisation domain contains similarity to Interpro domain IPR008906 (HAT dimerisation)
40	srj-29	F22B8.1	n/a	chrV 16,076,456	C. elegans SRJ-29 protein; contains similarity to Pfam domains PF00060 (Ligand-gated ion channel) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR001638 (Bacterial extracellular solute-binding protein, family 3), IPR015683 (Glutamate receptor-related), IPR001320 (Ionotropic glutamate receptor), IPR001828 (Extracellular ligand-binding receptor), IPR001508 (NMDA receptor)
41	F48A11.2	F48A11.2	n/a	chrII 198,605
42	Y62H9A.7	Y62H9A.7	n/a	chrX 11,885,307	contains similarity to Mus musculus Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterases1A (EC 3.1.4.17) (Cam-PDE 1A) (61 kDa Cam-PDE).; SW:CN1A_MOUSE
43	B0284.2	B0284.2	n/a	chrIII 4,382,911	contains similarity to Homo sapiens Isoform 1 of Progesterone-induced-blocking factor 1; ENSEMBL:ENSP00000317144
44	T21D12.7	T21D12.7	n/a	chrIV 290,077	contains similarity to Pfam domain PF00014 Kunitz/Bovine pancreatic trypsin inhibitor domain contains similarity to Interpro domains IPR002223 (Proteinase inhibitor I2, Kunitz metazoa), IPR013090 (Phospholipase A2, active site), IPR006150 (Cysteine-rich repeat)
45	scl-27	ZK6.3	n/a	chrV 400,930	C. elegans SCL-27 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR001283 (Allergen V5/Tpx-1 related)
46	F41H10.4	F41H10.4	n/a	chrIV 5,365,559	contains similarity to Trichomonas vaginalis G3 Viral A-type inclusion protein, putative.; TR:A2DDX5
47	fbxa-56	T12B5.7	n/a	chrIII 937,668	C. elegans FBXA-56 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
48	rpb-6	C06A1.5	n/a	chrII 10,579,552	C. elegans RPB-6 protein; contains similarity to Pfam domain PF01192 RNA polymerase Rpb6 contains similarity to Interpro domains IPR006110 (RNA polymerase Rpb6), IPR002048 (Calcium-binding EF-hand), IPR006111 (DNA-directed RNA polymerase, 14 to 18 kDa subunit), IPR012293 (RNA polymerase subunit, RPB6/omega)
49	C10G11.6	C10G11.6	n/a	chrI 6,291,932
50	srd-16	C04E6.9	n/a	chrV 5,899,272	C. elegans SRD-16 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR003002 (7TM chemoreceptor, subfamily 1), IPR000276 (GPCR, rhodopsin-like)