UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	flp-23	F22B7.2	3e-30	chrIII 8,651,368	C. elegans FLP-23 protein ;
2	C29F5.5	C29F5.5	n/a	chrII 6,297,911
3	Y38H6C.18	Y38H6C.18	n/a	chrV 20,542,275	contains similarity to Saccharomyces cerevisiae Chromatin Assembly Complex, subunit 1: largest (p90) subunit of three-subunit protein complex (yeast CAF-I) involved in DNA-replication-linked nucleosome assembly. Homol. to p150 subunit human Chromatin Assembly Factor-I (CAF-I); SGD:YPR018W
4	F59A7.7	F59A7.7	n/a	chrV 2,012,769	contains similarity to Pfam domain PF00291 Pyridoxal-phosphate dependent enzyme contains similarity to Interpro domain IPR001926 (Pyridoxal phosphate-dependent enzyme, beta subunit)
5	F18C5.4	F18C5.4	n/a	chrII 6,564,443	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR001478 (PDZ/DHR/GLGF)
6	H38K22.4	H38K22.4	n/a	chrIII 4,323,189	contains similarity to Interpro domain IPR010070 ()
7	T21E3.2	T21E3.2	n/a	chrI 3,931,189	contains similarity to Homo sapiens 55 kDa protein; ENSEMBL:ENSP00000273725
8	F41D3.6	F41D3.6	n/a	chrI 12,265,384	contains similarity to Pfam domain PF01531 Glycosyl transferase family 11 contains similarity to Interpro domain IPR002516 (Glycosyl transferase, family 11)
9	R107.2	R107.2	n/a	chrIII 9,044,850	contains similarity to Pfam domain PF01256 Carbohydrate kinase contains similarity to Interpro domain IPR000631 (Carbohydrate kinase)
10	srt-48	Y41E3.15	n/a	chrIV 15,067,356	C. elegans SRT-48 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
11	F48B9.3	F48B9.3	n/a	chrX 2,165,518	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domain IPR005514 (Protein of unknown function DUF316)
12	T01C3.5	T01C3.5	n/a	chrV 14,997,353	contains similarity to Oryza sativa Similar to gene for Pib.; TR:Q9LWW7
13	cwp-3	C37H5.4	n/a	chrV 4,843,326	cwp-3 encodes an unfamiliar protein predicted to be secreted and alleged to be coexpressed with polycystins; CWP-3 is dispensable for viability and gross morphology in mass RNAi screens.
14	F54F12.1	F54F12.1	n/a	chrIII 13,051,731	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000694 (Proline-rich region), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase), IPR000340 (Protein-tyrosine phosphatase, dual specificity)
15	F21H7.2	F21H7.2	n/a	chrV 16,228,334	contains similarity to Homo sapiens Neurofilament heavy polypeptide; ENSEMBL:ENSP00000311997
16	T11G6.7	T11G6.7	n/a	chrIV 10,844,729	contains similarity to Fundulus heteroclitus Lens major intrinsic protein.; TR:Q9PUE2
17	F47F6.4	F47F6.4	n/a	chrII 1,262,570
18	F45C12.9	F45C12.9	n/a	chrII 1,709,067	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
19	C31G12.4	C31G12.4	n/a	chrV 18,177,707	contains similarity to Pfam domain PF00646 (F-box domain)
20	F56H6.6	F56H6.6	n/a	chrI 12,295,311	contains similarity to Mus musculus N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferases(EC 2.4.1.149) (Poly-N-acetyllactosamine extension enzyme) (I-beta-s1,3-N-acetylglucosaminyltransferase) (iGnT) (UDP-GlcNAc:betaGal beta-s1,3-N-acetylglucosaminyltransferase 1).; SW:Q8BWP8
21	Y62H9A.8	Y62H9A.8	n/a	chrX 11,891,763	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IEC0
22	Y113G7A.13	Y113G7A.13	n/a	chrV 20,143,831	contains similarity to Pfam domain PF01431 Peptidase family M13 contains similarity to Interpro domains IPR006025 (Peptidase M, neutral zinc metallopeptidases, zinc-binding site), IPR000718 (Peptidase M13, neprilysin)
23	C35E7.6	C35E7.6	n/a	chrI 10,818,223
24	Y70G10A.2	Y70G10A.2	n/a	chrIII 10,229,611	contains similarity to Pfam domains PF00008 (EGF-like domain) , PF07974 (EGF-like domain) contains similarity to Interpro domains IPR000742 (EGF-like, type 3), IPR006209 (EGF-like), IPR006210 (EGF), IPR013032 (EGF-like region, conserved site), IPR013111 (EGF, extracellular)
25	C35A11.2	C35A11.2	n/a	chrV 5,387,617
26	cyp-29A4	B0331.1	n/a	chrV 9,656,299	C. elegans CYP-29A4 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR002397 (Cytochrome P450, B-class), IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV)
27	srbc-3	F35F10.2	n/a	chrV 3,309,077	C. elegans SRBC-3 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
28	F07E5.8	F07E5.8	n/a	chrII 2,074,096	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
29	Y17G7B.19	Y17G7B.19	n/a	chrII 12,110,327	contains similarity to Pfam domain PF01666 (DX module)
30	F46B6.10	F46B6.10	n/a	chrV 9,801,717	contains similarity to Homo sapiens Hypothetical protein; TR:Q96QJ8
31	Y26D4A.9	Y26D4A.9	n/a	chrI 13,088,824	contains similarity to Pfam domain PF03175 DNA polymerase type B, organellar and viral contains similarity to Interpro domains IPR000215 (Protease inhibitor I4, serpin), IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus)
32	lgc-30	F58H7.3	n/a	chrIV 932,249	C. elegans LGC-30 protein; contains similarity to Pfam domain PF02931 Neurotransmitter-gated ion-channel ligand binding domain contains similarity to Interpro domains IPR002394 (Nicotinic acetylcholine receptor, N-terminal), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding)
33	F01D4.3	F01D4.3	n/a	chrIV 10,474,640	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR005819 (Histone H5), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site), IPR001984 (Peptidase S16, Lon protease)
34	T28A11.13	T28A11.13	n/a	chrV 3,249,973	contains similarity to Interpro domains IPR011594 (Thioredoxin-like), IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR006662 (Thioredoxin-related)
35	C08G5.3	C08G5.3	n/a	chrII 744,119	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
36	trf-1	F45G2.6	n/a	chrIII 13,431,808	The trf-1 gene encodes a protein with a meprin-associated Traf homology (MATH) domain that may be involved in apoptosis.
37	C38C3.7	C38C3.7	n/a	chrV 1,502,860	contains similarity to Pfam domains PF01827 (FTH domain) (2), PF00646 (F-box domain) contains similarity to Interpro domains IPR002900 (Protein of unknown function DUF38, Caenorhabditis species), IPR001810 (Cyclin-like F-box)
38	C42C1.3	C42C1.3	n/a	chrIV 12,269,969	contains similarity to Trypanosoma cruzi Hypothetical protein.; TR:Q4CVC5
39	ZK1290.7	ZK1290.7	n/a	chrII 7,524,953	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
40	K06A4.6	K06A4.6	n/a	chrV 9,480,821	contains similarity to Saccharomyces cerevisiae Synaptojanin-like protein; SGD:YOR109W
41	4R79.2	4R79.2	n/a	chrIV 17,481,819	contains similarity to Pfam domains PF00071 (Ras family) , PF08477 (Miro-like protein) contains similarity to Interpro domains IPR006688 (ADP-ribosylation factor), IPR002041 (Ran GTPase), IPR013753 (Ras), IPR006687 (GTP-binding protein SAR1), IPR003577 (Ras small GTPase, Ras type), IPR013684 (Miro-like), IPR003578 (Ras small GTPase, Rho type), IPR001806 (Ras GTPase), IPR005225 (Small GTP-binding protein), IPR003579 (Ras small GTPase, Rab type)
42	F47C12.7	F47C12.7	n/a	chrIV 3,994,654	contains similarity to Pfam domain PF05912 Caenorhabditis elegans protein of unknown function (DUF870) contains similarity to Interpro domain IPR008588 (Protein of unknown function DUF870, Caenorhabditis species)
43	tbx-33	Y66A7A.8	n/a	chrIII 11,635,769	C. elegans TBX-33 protein; contains similarity to Pfam domain PF00907 T-box contains similarity to Interpro domains IPR008967 (p53-like transcription factor, DNA-binding), IPR001699 (Transcription factor, T-box)
44	F28A10.1	F28A10.1	n/a	chrII 826,849	F28A10.1 encodes a putative small-molecule methyltransferase, belonging to a large nematode-specific expanded family; F28A10.1 inhibits CEP-1- and HUS-1-dependent germline apoptosis, as do BMK-1, RAD-50, and RAD-51; F28A10.1 is expressed in neurons, and F28A10.1 transcripts are enriched in spermatogenesis; although F's obvious homologs are all Caenorhabditis proteins, it has distant similarity to 31-O-demethyl-FK506 methyltransferase (FkbM) from Streptomyces, to other bacterial FkbM homologs, and to other metazoan homologs such as human LOC728464.
45	srw-141	H27D07.2	n/a	chrV 2,937,953	C. elegans SRW-141 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
46	F15G9.3	F15G9.3	n/a	chrX 9,710,815	contains similarity to Plasmodium falciparum Prolyl-t-RNA synthase, putative (EC 6.1.1.15).; TR:Q8I2Q5
47	W03D8.2	W03D8.2	n/a	chrI 2,799,577	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
48	ZC8.6	ZC8.6	n/a	chrX 4,985,068	contains similarity to Pfam domain PF00454 Phosphatidylinositol 3- and 4-kinase contains similarity to Interpro domain IPR000403 (Phosphatidylinositol 3- and 4-kinase, catalytic)
49	W02B8.3	W02B8.3	n/a	chrII 13,917,920	contains similarity to Pfam domain PF04870 Protein of unknown function, DUF644 contains similarity to Interpro domain IPR006954 (Protein of unknown function DUF644)
50	K04F1.8	K04F1.8	n/a	chrV 1,667,509