UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F22B5.4	F22B5.4	2.9999999999999997e-87	chrII 8,451,121	contains similarity to Pseudomonas putida Butylphenol hydroxylase component A1.; TR:Q842G6
2	T28A11.19	T28A11.19	n/a	chrV 3,269,156	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
3	acs-2	F28F8.2	n/a	chrV 15,568,615	C. elegans ACS-2 protein; contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
4	F15E6.3	F15E6.3	n/a	chrIV 4,295,274	contains similarity to Cryptococcus neoformans Glycine-rich RNA binding protein, putative.; TR:Q5KDS6
5	C34C6.7	C34C6.7	n/a	chrII 8,707,892	contains similarity to Interpro domain IPR000533 (Tropomyosin)
6	cnc-2	R09B5.3	n/a	chrV 1,449,921	cnc-2 encodes one of six C. elegans caenacin peptides; cnc-2 expression is strongly induced after infection by the fungus Drechmeria coniospora and the gram-negative bacteria Serratia marcescens, suggesting that it functions as a secreted antimicrobial peptide in the innate immune response.
7	F21C10.10	F21C10.10	n/a	chrV 9,096,675	contains similarity to Interpro domain IPR016040 (NAD(P)-binding)
8	cnc-1	R09B5.2	n/a	chrV 1,444,163	cnc-1 encodes one of six C. elegans caenacin peptides; CNC-1 is predicted to be a secreted protein that, based upon similarity to CNC-2, -4, and -6, may function as an antimicrobial peptide in the innate immune response.
9	scl-11	F49E11.6	n/a	chrIV 13,051,732	C. elegans SCL-11 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related)
10	grd-4	T01B10.1	n/a	chrX 8,501,684	grd-4 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground domain; the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins; GRD-4 is weakly required for normal molting; GRD-4 is also required for normal adult alae formation, growth to full size, and locomotion; all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking.
11	ora-1	F57H12.3	n/a	chrIV 7,978,407	C. elegans ORA-1 protein ; contains similarity to Onchocerca volvulus OV39 antigen (Fragment).; SW:P31730
12	ftn-1	C54F6.14	n/a	chrV 7,547,023	ftn-1 encodes one of two C. elegans ferritin heavy chain homologs; ftn-1 activity is essential for normal lifespan under iron stress conditions and, in addition, has been reported to be essential for embryogenesis; an ftn-1::gfp reporter is expressed in the intestine at all stages of development and its expression, as well as that of ftn-1 mRNA, increases under iron stress conditions and in the background of mutations in the second ferritin-encoding gene, ftn-2.
13	T20D4.11	T20D4.11	n/a	chrV 3,399,039	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
14	col-84	K12D12.3	n/a	chrII 11,869,021	C. elegans COL-84 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
15	cut-1	C47G2.1	n/a	chrII 11,270,278	cut-1 encodes a component of cuticlin, an insoluble residue of the nematode cuticle required for alae formation and radial shrinking during dauer differentiation; expressed specifically in the cuticle of dauer larvae and is secreted by the seam cells.
16	hsp-12.6	F38E11.2	n/a	chrIV 9,446,611	hsp-12.6 encodes a small heat-shock protein with very short N- and C-terminal domains flanking its central region of similarity to alpha-crystallins; HSP-12.6 is required in vivo for normal lifespan; HSP-12.6 is predominantly and ubiquitously expressed in L1 larvae without any obvious induction by stressors; but, in adult hermaphrodites, at least one HSP-12 is also expressed in spermatids (and perhaps spermatocytes), as well as in some vulval cells; moreover, hsp-12.6 is upregulated in 6- and 10-day-old daf-2 mutants, and this upregulation is highly reproducible (like that of five other genes, vit-2, vit-5, fat-3, nid-1, and mtl-1), strongly suggesting that hsp-12.6's expression may contribute to prolonged lifespan in dauer larvae; the hsp-12.6 promoter is predicted to have both DAF-16 and HSF-1 binding sites; hsp-12.6(RNAi) animals are shorter-lived than normal; recombinant HSP-12.6 is monomeric, and lacks molecular chaperone activity in vitro; hsp-12.6 induction requires DAF-16 and HSP-1, but not SMK-1.
17	grl-19	R02D3.6	n/a	chrIV 252,252	grl-19 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central low-complexity region, and a C-terminal Ground-like (Grl) domain; GRL-19 is expressed in intestine; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
18	F09F7.6	F09F7.6	n/a	chrIII 5,551,674
19	nlp-29	B0213.4	n/a	chrV 3,984,616	nlp-29 encodes a neuropeptide-like protein; nlp-29 appears to play a role in innate immunity, as its expression is strongly induced following bacterial and fungal infection; nlp-29 is expressed in the hypodermis and in the intestine; nlp-29 expression is regulated by TIR-1, an ortholog of SARM, a Toll-interleukin 1 receptor (TIR) domain protein, and by the RAB-1 GTPase and the product of R53.4, a mitochondrial ATP synthase subunit f homolog.
20	dct-7	F15E6.8	n/a	chrIV 4,290,416	C. elegans DCT-7 protein ;
21	F22B7.9	F22B7.9	n/a	chrIII 8,653,148
22	col-45	F53G12.7	n/a	chrI 116,588	col-45 encodes a cuticle collagen.
23	col-158	D2023.7	n/a	chrV 11,830,378	C. elegans COL-158 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
24	fipr-24	C37A5.8	n/a	chrI 14,157,799	C. elegans FIPR-24 protein ;
25	ZC395.5	ZC395.5	n/a	chrIII 5,268,152
26	dod-3	C24B9.9	n/a	chrV 2,730,844	C. elegans DOD-3 protein ;
27	C30F12.3	C30F12.3	n/a	chrI 6,971,092
28	cpr-2	F36D3.9	n/a	chrV 16,533,516	C. elegans CPR-2 protein; contains similarity to Pfam domain PF00112 Papain family cysteine protease contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000169 (Peptidase, cysteine peptidase active site), IPR000668 (Peptidase C1A, papain C-terminal)
29	cpi-1	K08B4.6	n/a	chrIV 6,093,107	cpi-1 encodes a homolog of cysteine protease inhibitors (cystatins); cpi-1 is at least superficially dispensable for viability and gross morphology.
30	F40G12.5	F40G12.5	n/a	chrV 14,269,931	contains similarity to Pfam domain PF03236 Domain of unknown function DUF263 contains similarity to Interpro domain IPR004920 (Protein of unknown function DUF263)
31	ZK970.7	ZK970.7	n/a	chrII 10,312,538	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domain IPR003677 (Protein of unknown function DUF148)
32	nlp-28	B0213.3	n/a	chrV 3,988,091	C. elegans NLP-28 protein ; contains similarity to Ixodes scapularis Putative secreted salivary gland peptide.; TR:Q5Q982
33	F56H9.2	F56H9.2	n/a	chrV 12,637,872	contains similarity to Plasmodium falciparum Transport protein, putative.; TR:Q8IHR3
34	hsp-12.3	F38E11.1	n/a	chrIV 9,445,065	hsp-12.3 encodes a small heat-shock protein that forms heterotetramers with HSP-12.2 and has no chaperone-like activity; structurally, HSP-12.3 is mostly a beta-sheet; at least one HSP-12 (which may or may not be HSP-12.2) is ubiquitously expressed in L1 larvae, and later expressed in adult spermatids (and perhaps spermatocytes), and some adult vulval cells; hsp-12.3 is upregulated in daf-2 mutants, suggesting that hsp-12.3's expression may contribute to prolonged lifespan in dauer larvae.
35	F16B4.7	F16B4.7	n/a	chrV 1,585,902	contains similarity to Drosophila melanogaster Flybase gene name is CG7294-PA;; FLYBASE:CG7294
36	E04F6.9	E04F6.9	n/a	chrII 7,211,856
37	col-35	C15A11.1	n/a	chrI 7,386,359	col-35 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-35 are most closely related to those of COL-8, COL-19, and COL-39.
38	C10G8.4	C10G8.4	n/a	chrV 5,312,109	C10G8.4 encodes a putative secreted TIL-domain protease inhibitor paralogous to SWM-1, ISL-1, and the products of 11 other C. elegans genes; C10G8.4 and its relatives are collectively similar to other TIL-domain protease inhibitors from nematodes, insects, and vertebrates; C10G8.4 has no obvious function in mass RNAi assays.
39	T01C3.4	T01C3.4	n/a	chrV 14,994,531	contains similarity to Pfam domain PF01674 Lipase (class 2) contains similarity to Interpro domain IPR002918 (Lipase, class 2)
40	C35C5.9	C35C5.9	n/a	chrX 11,536,770	contains similarity to Haemophilus influenzae Monofunctional biosynthetic peptidoglycan transglycosylases(EC 2.4.2.-) (Monofunctional TGase).; SW:MTGA_HAEIN
41	C33G8.3	C33G8.3	n/a	chrV 7,007,900	contains similarity to Interpro domain IPR009149 (BR22)
42	col-102	C18H7.3	n/a	chrIV 605,160	col-102 encodes a cuticle collagen.
43	C18A11.1	C18A11.1	n/a	chrX 8,069,882
44	W06G6.11	W06G6.11	n/a	chrV 16,648,635	contains similarity to Mus musculus Calsyntenin-1 precursor.; SW:CLS1_MOUSE
45	nlp-32	F30H5.2	n/a	chrIII 486,349	C. elegans NLP-32 protein; contains similarity to Interpro domain IPR002952 (Eggshell protein)
46	T26H2.7	T26H2.7	n/a	chrV 19,220,389	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
47	ZK971.1	ZK971.1	n/a	chrII 10,279,516	contains similarity to Arabidopsis thaliana Gb\|AAB67622.1.; TR:Q9LT65
48	B0507.8	B0507.8	n/a	chrV 8,761,695	contains similarity to Schizosaccharomyces pombe Nucleoporin nup211 (Nuclear pore protein nup211).; SW:O74424
49	sodh-1	K12G11.3	n/a	chrV 11,888,912	C. elegans SODH-1 protein; contains similarity to Pfam domains PF00107 (Zinc-binding dehydrogenase) , PF08240 (Alcohol dehydrogenase GroES-like domain) contains similarity to Interpro domains IPR013149 (Alcohol dehydrogenase, zinc-binding), IPR011032 (GroES-like), IPR013154 (Alcohol dehydrogenase GroES-like), IPR002085 (Alcohol dehydrogenase superfamily, zinc-containing), IPR016040 (NAD(P)-binding), IPR002328 (Alcohol dehydrogenase, zinc-containing, conserved site)
50	nlp-35	C33A12.2	n/a	chrIV 9,518,633	C. elegans NLP-35 protein ;