UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F20B6.1	F20B6.1	3e-93	chrX 4,200,926	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
2	C04E6.5	C04E6.5	n/a	chrV 5,903,504	contains similarity to Pfam domain PF00443 Ubiquitin carboxyl-terminal hydrolase contains similarity to Interpro domain IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2)
3	Y57G11B.3	Y57G11B.3	n/a	chrIV 14,572,262	contains similarity to Pfam domain PF00042 Globin contains similarity to Interpro domains IPR012292 (Globin), IPR009050 (Globin-like), IPR013314 (Globin, lamprey/hagfish type), IPR000971 (Globin, subset)
4	Y45F10B.8	Y45F10B.8	n/a	chrIV 13,577,771	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000533 (Tropomyosin)
5	K05F1.8	K05F1.8	n/a	chrII 5,799,460
6	T19D12.5	T19D12.5	n/a	chrII 6,635,499	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
7	clec-142	K01C8.8	n/a	chrII 8,279,792	C. elegans CLEC-142 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR001304 (C-type lectin)
8	Y57G11C.14	Y57G11C.14	n/a	chrIV 14,800,135	contains similarity to Saccharomyces cerevisiae Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p; SGD:YLR467W
9	F30F8.2	F30F8.2	n/a	chrI 7,829,032	contains similarity to Pfam domains PF04960 (Glutaminase) , PF00023 (Ankyrin repeat) (3)contains similarity to Interpro domains IPR015868 (Glutaminase, core), IPR002110 (Ankyrin), IPR007043 (Glutaminase), IPR012338 (Beta-lactamase-type transpeptidase fold)
10	ZK795.2	ZK795.2	n/a	chrIV 12,557,986	contains similarity to Homo sapiens hypothetical protein; ENSEMBL:ENSP00000352916
11	C18E3.1	C18E3.1	n/a	chrI 4,213,503
12	Y51A2B.6	Y51A2B.6	n/a	chrV 18,393,120	contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
13	ZC262.4	ZC262.4	n/a	chrIII 8,333,867
14	R10D12.10	R10D12.10	n/a	chrV 13,957,221	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
15	R155.2	R155.2	n/a	chrIII 1,967,000	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR013992 (Adenylate cyclase-associated CAP, N-terminal), IPR000387 (Protein-tyrosine phosphatase), IPR003125 (Protein of unknown function WSN)
16	W02A2.8	W02A2.8	n/a	chrIV 13,356,775
17	Y57G11C.6	Y57G11C.6	n/a	chrIV 14,759,618	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
18	abt-1	C24F3.5	n/a	chrIV 10,210,507	abt-1 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCA subfamily of transport proteins; ABT-1 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of abt-1 activity via RNAi results in no obvious defects, the precise role of abt-1 in C. elegans development and/or behavior is not yet known.
19	C09H10.9	C09H10.9	n/a	chrII 11,105,179
20	ttr-9	C33A12.15	n/a	chrIV 9,505,947	C. elegans TTR-9 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
21	col-53	M01A12.1	n/a	chrI 5,645,857	C. elegans COL-53 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
22	F54C8.1	F54C8.1	n/a	chrIII 9,440,304	contains similarity to Pfam domains PF00725 (3-hydroxyacyl-CoA dehydrogenase, C-terminal domain) , PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain) contains similarity to Interpro domains IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR006108 (3-hydroxyacyl-CoA dehydrogenase, C-terminal), IPR013328 (Dehydrogenase, multihelical), IPR006176 (3-hydroxyacyl-CoA dehydrogenase, NAD binding), IPR006180 (3-hydroxyacyl-CoA dehydrogenase, conserved site), IPR016040 (NAD(P)-binding), IPR006036 (Potassium uptake protein TrkA)
23	B0511.11	B0511.11	n/a	chrI 10,649,379
24	ZK930.4	ZK930.4	n/a	chrII 11,908,092	contains similarity to Homo sapiens Similar to hypothetical protein FLJ20094; ENSEMBL:ENSP00000324274
25	dlc-6	Y106G6G.3	n/a	chrI 10,323,861	dlc-6 encodes a putative dynein light chain 1; DLC-6 is orthologous to human DYNLL1 (OMIM:601562) and DYNLL2 (OMIM:608942), but much more divergent from them than its paralog DLC-1; DLC-6's other paralogs are DLC-2/-5; DLC-6 has no obvious function in mass RNAi assays.
26	C27B7.6	C27B7.6	n/a	chrIV 8,904,670	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
27	F26F2.1	F26F2.1	n/a	chrV 20,555,875	contains similarity to Drosophila melanogaster Flybase gene name is CG2839-PA;; FLYBASE:CG2839
28	C28C12.1	C28C12.1	n/a	chrIV 8,502,192	contains similarity to Interpro domain IPR002217 (Lipoprotein LPP20)
29	K03H1.9	K03H1.9	n/a	chrIII 9,941,014	contains similarity to Homo sapiens DAN15 protein; TR:Q99491
30	ZC581.2	ZC581.2	n/a	chrI 6,656,611	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
31	M110.7	M110.7	n/a	chrII 8,235,210	contains similarity to Pfam domain PF01237 Oxysterol-binding protein contains similarity to Interpro domain IPR000648 (Oxysterol-binding protein)
32	B0218.5	B0218.5	n/a	chrIV 8,155,831	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
33	C36F7.5	C36F7.5	n/a	chrI 9,575,404	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR003979 (Tropoelastin), IPR013286 (Annexin, type VII)
34	C32E12.1	C32E12.1	n/a	chrI 5,234,144	contains similarity to Interpro domain IPR005819 (Histone H5)
35	T08H10.1	T08H10.1	n/a	chrV 4,484,972	contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domain IPR001395 (Aldo/keto reductase)
36	fbxa-178	F17A9.1	n/a	chrV 6,116,834	F17A9.1 encodes a divergent ONECUT class CUT homeobox protein with a single N-terminal cut domain; F17A9.1 has an atypical tyrosine residue at position 48 of its homeodomain rather than a phenylalanine or tryptophan residue; the cut domain may be a compact DNA-binding domain composed of alpha helices; phylogenetically, F17A9.1 is (somewhat distantly) affiliated with C17H12.9, Drosophila ONECUT, and mammalian HNF6 proteins; F17A9.1 has no obvious function in mass RNAi assays.
37	C18E9.8	C18E9.8	n/a	chrII 8,986,939	C18E9.8 is orthologous to the human gene JOINED TO JAZF1 (JJAZ1; OMIM:606245), which when mutated leads to disease.
38	W09C3.8	W09C3.8	n/a	chrI 4,716,751
39	C34B2.4	C34B2.4	n/a	chrI 10,672,056	contains similarity to Pfam domain PF00412 LIM domain contains similarity to Interpro domain IPR001781 (Zinc finger, LIM-type)
40	Y106G6E.1	Y106G6E.1	n/a	chrI 10,199,352	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
41	K07A12.5	K07A12.5	n/a	chrI 8,694,231	contains similarity to Plasmodium falciparum Glutamic acid-rich protein precursor.; SW:GARP_PLAFF
42	ZK84.2	ZK84.2	n/a	chrII 6,015,055
43	Y106G6G.1	Y106G6G.1	n/a	chrI 10,329,688	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I4Z6
44	twk-6	F17C8.5	n/a	chrIII 4,743,772	twk-6 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains; as loss of TWK-6 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of TWK-6 in C. elegans development and/or behavior is not yet known; TWK-6 may, however, function redundantly with other TWK channels; TWK-6 is expressed in the hypodermis.
45	ech-3	F43H9.1	n/a	chrV 8,022,781	C. elegans ECH-3 protein; contains similarity to Pfam domain PF00378 Enoyl-CoA hydratase/isomerase family contains similarity to Interpro domain IPR001753 (Crotonase, core)
46	F13E9.5	F13E9.5	n/a	chrIV 10,883,638	contains similarity to Helicobacter pylori;Helicobacter pylori J99 Hypothetical protein HP0031/JHP0027.; SW:Y031_HELPY
47	C50D2.3	C50D2.3	n/a	chrII 106,848	contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
48	F38A5.8	F38A5.8	n/a	chrIV 6,600,170
49	B0334.10	B0334.10	n/a	chrII 11,518,945	contains similarity to Vaccinia virus TB17L.; TR:Q9JF36
50	C52E4.7	C52E4.7	n/a	chrV 11,995,047	C52E4.7 encodes a member of the histidine phosphatase superfamily orthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP), human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736); C52E4.7 is also paralogous to C. elegans F09C12.8, F53B6.7, F55A11.11, and T07F12.1; while no explicit prediction has been made for C52E4.7's activity, it might be catalytically inactive; as loss of C52E4.7 activity results in no obvious defects, the precise role of C52E4.7 in C. elegans development and/or behavior is not yet known.