UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F20A1.4	F20A1.4	0	chrV 7,020,334
2	K11H3.5	K11H3.5	n/a	chrIII 9,844,623	contains similarity to Homo sapiens Splice isoform 1 of P49321 Nuclear autoantigenic sperm protein; ENSEMBL:ENSP00000320980
3	F57C9.6	F57C9.6	n/a	chrI 4,823,394	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
4	C37H5.2	C37H5.2	n/a	chrV 4,848,674	contains similarity to Pfam domain PF00561 alpha/beta hydrolase fold contains similarity to Interpro domains IPR000073 (Alpha/beta hydrolase fold-1), IPR000639 (Epoxide hydrolase-like), IPR003089 (Alpha/beta hydrolase), IPR002410 (Peptidase S33, prolyl aminopeptidase)
5	B0554.7	B0554.7	n/a	chrV 439,300	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF05978 (Eukaryotic protein of unknown function (DUF895)) contains similarity to Interpro domains IPR010291 (Protein of unknown function DUF895, eukaryotic), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
6	K02D3.1	K02D3.1	n/a	chrX 13,707,203	contains similarity to Clostridium acetobutylicum Transcriptional regulator, AcrR family.; TR:Q97IH3
7	B0024.3	B0024.3	n/a	chrV 10,288,395	contains similarity to Pfam domain PF01705 CX module contains similarity to Interpro domain IPR002619 (Protein of unknown function CX)
8	T26F2.2	T26F2.2	n/a	chrV 13,982,237	contains similarity to Homo sapiens Isoform 1 of Protein Dom3Z; ENSEMBL:ENSP00000337759
9	C15C8.1	C15C8.1	n/a	chrV 12,735,091	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR003073 (Orphan nuclear receptor, NURR type)
10	C56A3.6	C56A3.6	n/a	chrV 13,554,913	contains similarity to Pfam domain PF00036 (EF hand)
11	B0198.2	B0198.2	n/a	chrX 12,030,645	contains similarity to Dictyostelium discoideum Non-receptor tyrosine kinase spore lysis A (EC 2.7.1.112) (Tyrosine-sprotein kinase 1).; SW:KYK1_DICDI
12	T20D4.6	T20D4.6	n/a	chrV 3,411,676	contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin-like, C-terminal), IPR014752 (Arrestin, C-terminal), IPR011021 (Arrestin-like, N-terminal)
13	dod-22	F55G11.5	n/a	chrIV 12,966,321	C. elegans DOD-22 protein; contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domains IPR000859 (CUB), IPR003366 (CUB-like region)
14	ncx-5	Y32F6B.2	n/a	chrV 10,488,232	ncx-5 encodes a putative 4Na[+]/1Ca[2+],1K[+] exchanger, orthologous to human SLC24A1-5 and paralogous to NCX-4; NCX-5 is predicted to export free cytoplasmic Ca[2+] with low affinity but high capacity, being complemented by low-capacity/high-affinity Ca[2+] ATPase pumps such as MCA-1/-3; NCX-5 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-5 has no obvious function in mass RNAi assays.
15	K04H4.5	K04H4.5	n/a	chrIII 9,360,700	contains similarity to Yaba monkey tumor virus Yb-L1L protein.; TR:Q9QBC3
16	sre-45	F54F11.3	n/a	chrII 13,520,326	C. elegans SRE-45 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
17	C09B9.1	C09B9.1	n/a	chrIV 5,039,116
18	C39F7.1	C39F7.1	n/a	chrV 1,261,350
19	C01A2.4	C01A2.4	n/a	chrI 13,393,035	contains similarity to Pfam domain PF03357 Snf7 contains similarity to Interpro domain IPR005024 (Snf7)
20	C34F6.7	C34F6.7	n/a	chrX 11,212,716	contains similarity to Drosophila melanogaster Flybase gene name is CG14646-PA;; FLYBASE:CG14646
21	B0348.2	B0348.2	n/a	chrV 46,173	contains similarity to Interpro domain IPR006629 (LPS-induced tumor necrosis factor alpha factor)
22	glb-4	C09H10.8	n/a	chrII 11,110,315	glb-4 encodes a globin; glb-4 transcription is higher in L3 and dauers than in young adults; glb-4 is required for embryonic viability, fertility, vulval development, and normal distal tip cell migration in mass RNAi assays.
23	F59F5.5	F59F5.5	n/a	chrX 10,547,442	contains similarity to Actinobacillus pleuropneumoniae KDO transferase.; TR:Q9AIE5
24	F32D8.1	F32D8.1	n/a	chrV 10,882,070	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
25	F14F8.9	F14F8.9	n/a	chrV 16,668,104	contains similarity to Interpro domain IPR002625 (Smr protein/MutS2 C-terminal)
26	T14B1.2	T14B1.2	n/a	chrX 9,651,998	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
27	F28E10.2	F28E10.2	n/a	chrIV 4,563,722	contains similarity to Pfam domains PF00008 (EGF-like domain) , PF07974 (EGF-like domain) contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR000742 (EGF-like, type 3), IPR006209 (EGF-like), IPR007110 (Immunoglobulin-like), IPR003599 (Immunoglobulin subtype), IPR013032 (EGF-like region, conserved site), IPR013111 (EGF, extracellular)
28	sra-28	F18C5.6	n/a	chrII 6,572,192	C. elegans SRA-28 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
29	glb-9	C28F5.2	n/a	chrII 7,510,599	glb-9 encodes a globin with no obvious function in mass RNAi assays.
30	ikb-1	C04F12.3	n/a	chrI 9,687,053	ikb-1 encodes an ortholog of human BCL3 (OMIM:109560) that physically interacts with the checkpoint protein MRT-2; ikb-1(nr2019) and ikb-1(nr2027) mutants display no obvious phenotype other than shortened lifespan; mutation of BCL3 is frequently associated with recurring translocations found in the neoplastic cells of patients with chronic lymphocytic leukemia, and has been implicated in cell cycle control (perhaps via apoptosis).
31	K07H8.5	K07H8.5	n/a	chrIV 8,272,091
32	K02F6.6	K02F6.6	n/a	chrII 2,530,385	contains similarity to Pfam domain PF02214 K+ channel tetramerisation domain contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation)
33	T21B10.6	T21B10.6	n/a	chrII 8,945,096	contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domain IPR001507 (Endoglin/CD105 antigen)
34	ZC404.1	ZC404.1	n/a	chrV 6,794,516
35	F56C3.3	F56C3.3	n/a	chrX 1,358,147
36	twk-40	T28A8.1	n/a	chrIII 13,487,791	C. elegans TWK-40 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
37	F47G6.3	F47G6.3	n/a	chrI 1,467,585	contains similarity to Homo sapiens Putative uncharacterized protein (Fragment); ENSEMBL:ENSP00000333119
38	npr-1	C39E6.6	n/a	chrX 4,768,551	npr-1 encodes a predicted G protein-coupled neuropeptide receptor that is homologous to the mammalian neuropeptide Y (NPY) receptor (OMIM:162641) required for regulating anxiety, food consumption, and pain sensation; in C. elegans, NPR-1 is involved in ethological variations of social behavior such as social versus solitary feeding; NPR-1 also affects some aspect of UNC-6/netrin-mediated branching of motor neurons, as strong npr-1 mutations can suppress abnormal migration of ventral nerve cord neurons induced by overexpression of UNC-6 lacking domain C; NPR-1 is expressed predominantly in the nervous system, and particularly in the AQR, PQR, and URX neurons that are exposed to the body fluid.
39	T20D4.5	T20D4.5	n/a	chrV 3,414,578	contains similarity to Pfam domain PF04721 Domain of unknown function (DUF750) contains similarity to Interpro domain IPR006588 (Protein of unknown function PAW)
40	nhr-36	F07C3.10	n/a	chrV 9,258,968	C. elegans NHR-36 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF01461 (7TM chemoreceptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR003002 (7TM chemoreceptor, subfamily 1), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
41	C31H2.3	C31H2.3	n/a	chrX 5,152,942
42	F37C12.1	F37C12.1	n/a	chrIII 7,186,028	contains similarity to Pfam domain PF04502 Family of unknown function (DUF572) contains similarity to Interpro domain IPR007590 (Protein of unknown function DUF572)
43	srbc-65	Y32B12B.3	n/a	chrV 16,551,603	C. elegans SRBC-65 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
44	F54D5.11	F54D5.11	n/a	chrII 11,541,574	contains similarity to Pfam domain PF02186 TFIIE beta subunit core domain contains similarity to Interpro domains IPR011991 (Winged helix repressor DNA-binding), IPR016656 (Transcription initiation factor IIE, beta subunit), IPR003166 (Transcription factor TFIIE beta subunit, core)
45	ugt-54	T25B9.7	n/a	chrIV 10,763,022	C. elegans UGT-54 protein; contains similarity to Pfam domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase contains similarity to Interpro domains IPR002416 (Bacterial general secretion pathway protein H), IPR001546 (Pheromone A receptor), IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
46	F20D1.3	F20D1.3	n/a	chrX 14,977,334	contains similarity to Interpro domains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR000018 (P2Y4 purinoceptor), IPR015915 (Kelch-type beta propeller)
47	clec-163	Y39A1B.1	n/a	chrIII 10,795,241	C. elegans CLEC-163 protein; contains similarity to Pfam domains PF00092 (von Willebrand factor type A domain) , PF00059 (Lectin C-type domain) contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002035 (von Willebrand factor, type A)
48	str-208	F26G5.2	n/a	chrV 4,957,686	C. elegans STR-208 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
49	T11A5.6	T11A5.6	n/a	chrV 9,884,090	contains similarity to Pfam domain PF00648 Calpain family cysteine protease contains similarity to Interpro domains IPR001300 (Peptidase C2, calpain), IPR001876 (Zinc finger, RanBP2-type)
50	C25G6.3	C25G6.3	n/a	chrX 1,235,994	contains similarity to Pfam domain PF02178 AT hook motif contains similarity to Interpro domains IPR000637 (HMG-I and HMG-Y, DNA-binding), IPR011130 (SecA preprotein cross-linking region), IPR007087 (Zinc finger, C2H2-type)