UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F19F10.1	F19F10.1	2e-107	chrV 7,563,460	contains similarity to Pfam domain PF00178 Ets-domain contains similarity to Interpro domains IPR000418 (Ets), IPR011991 (Winged helix repressor DNA-binding)
2	W07G1.7	W07G1.7	n/a	chrII 13,965,516
3	fipr-23	C37A5.4	n/a	chrI 14,153,722	C. elegans FIPR-23 protein ; contains similarity to Homo sapiens Keratin-associated protein 20-2; ENSEMBL:ENSP00000330746
4	C39D10.2	C39D10.2	n/a	chrX 7,889,123
5	B0228.8	B0228.8	n/a	chrII 7,760,555
6	nas-28	F42A10.8	n/a	chrIII 6,182,093	C. elegans NAS-28 protein; contains similarity to Pfam domain PF01400 Astacin (Peptidase family M12A) contains similarity to Interpro domains IPR017050 (Peptidase M12A, astacin, nematode), IPR006025 (Peptidase M, neutral zinc metallopeptidases, zinc-binding site), IPR001506 (Peptidase M12A, astacin), IPR006026 (Peptidase, metallopeptidases), IPR000859 (CUB), IPR013032 (EGF-like region, conserved site)
7	ZK1248.1	ZK1248.1	n/a	chrII 5,843,377	ZK1248.1 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; ZK1248.1 has no clear orthologs in other organisms.
8	fipr-22	C37A5.2	n/a	chrI 14,155,893	C. elegans FIPR-22 protein ; contains similarity to Homo sapiens Keratin-associated protein 20-2; ENSEMBL:ENSP00000330746
9	F35E2.3	F35E2.3	n/a	chrI 11,735,172	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domain IPR005514 (Protein of unknown function DUF316)
10	clec-110	F17B5.5	n/a	chrI 13,204,938	C. elegans CLEC-110 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
11	F43G9.5	F43G9.5	n/a	chrI 8,615,863	F43G9.5 encodes a NUDIX hydrolase that that inhibits DHC-1 in vivo, and is a (perhaps evolutionarily conserved) target of transcriptional activation by DAF-16; F43G9.5(RNAi) suppresses the lethality of conditional dhc-1 mutations, as well as the spindle length and cytokinesis defects of dhc-1(or195), indicating that F43G9.5 negatively regulates dynein; while loss of F43G9.5 function has no obvious effect on lifespan, dauer formation, or fat storage, F43G9.5 is required for embryonic development, fertility, and general health in mass RNAi assays.
12	nas-17	K03B8.2	n/a	chrV 11,399,699	nas-17 encodes an astacin-like metalloprotease.
13	T10D4.7	T10D4.7	n/a	chrII 3,118,051	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
14	R11D1.3	R11D1.3	n/a	chrV 12,711,700	contains similarity to Proteus mirabilis Hypothetical protein (Fragment).; TR:O86985
15	W02B3.5	W02B3.5	n/a	chrIII 686,655	contains similarity to Pfam domain PF06828 Fukutin-related contains similarity to Interpro domain IPR009644 (Fukutin-related)
16	aqp-3	Y69E1A.7	n/a	chrIV 10,962,555	aqp-3 encodes an aquaglyceroporin whose expression in Xenopus oocytes increases water or glycerol permeability five- to seven-fold; loss of AQP-3 activity via mutation or RNAi results in no obvious defects; however, AQP-3, in conjunction with AQP-2, AQP-4, and AQP-8, is weakly required for recovery from hypotonic stress; AQP-3 is expressed in the intestine, excretory cell, seminal vesicle, and vas deferens.
17	F57H12.4	F57H12.4	n/a	chrIV 7,971,993	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR001920 (Asp/Glu racemase), IPR009126 (Cholecystokinin receptor), IPR000276 (GPCR, rhodopsin-like)
18	B0207.5	B0207.5	n/a	chrI 5,927,603
19	T04A6.2	T04A6.2	n/a	chrIII 7,615,172
20	gbh-2	M05D6.7	n/a	chrII 8,486,654	gbh-2 encodes an ortholog of human gamma butyrobetaine hydroxilase 2 involved in carnitine biosynthesis; RNA interference of gbh-2 results in malformation of the gonad and accumulation of fat in the pseudocoelomic cavity and in intestinal cells; the GBH-2-GFP fusion protein is predominantly expressed in intestinal cells from early embryogenesis.
21	grd-9	C04E6.6	n/a	chrV 5,896,978	grd-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central low-complexity proline-rich domain, and a C-terminal Ground domain; the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins; GRD-9 is weakly required for normal molting; GRD-9 is also required for normal growth to full size, locomotion, and male tail development; all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking.
22	C35B1.3	C35B1.3	n/a	chrIV 4,081,235
23	H09F14.1	H09F14.1	n/a	chrV 10,614,197	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
24	M60.7	M60.7	n/a	chrX 8,259,771	contains similarity to Pfam domains PF07525 (SOCS box) , PF00023 (Ankyrin repeat) (9)contains similarity to Interpro domains IPR002110 (Ankyrin), IPR001496 (SOCS protein, C-terminal)
25	W03G1.2	W03G1.2	n/a	chrIV 525,588	contains similarity to Interpro domain IPR005819 (Histone H5)
26	F52E1.8	F52E1.8	n/a	chrV 8,393,368	contains similarity to Pfam domains PF00300 (Phosphoglycerate mutase family) , PF00328 (Histidine acid phosphatase) contains similarity to Interpro domains IPR000560 (Histidine acid phosphatase), IPR013078 (Phosphoglycerate mutase)
27	zig-5	Y48A6A.1	n/a	chrIII 10,952,247	zig-5 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-5::gfp reporter fusion is expressed in a number of neurons, including PVT, VD1-13, RID, AFD, ASK, RIV, RIB, PVQ, DVA, and RIS; zig-5::gfp is detected in the PVT neuron beginning at the three-fold stage of embryogenesis and continuing throughout larval development; loss of zig-5 activity in large-scale RNAi screens has been reported to result in low levels of embryonic lethality.
28	numr-1	F08F8.5	n/a	chrIII 7,362,966	C. elegans NUMR-1 protein ;
29	F07G11.7	F07G11.7	n/a	chrV 7,303,485	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
30	T21C9.11	T21C9.11	n/a	chrV 10,594,469	contains similarity to Homo sapiens Popeye domain containing protein 3; ENSEMBL:ENSP00000254765
31	clec-108	Y26D4A.6	n/a	chrI 13,081,794	C. elegans CLEC-108 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
32	snb-5	C30A5.5	n/a	chrIII 8,204,022	snb-5 encodes a predicted synaptobrevin.
33	F36A4.1	F36A4.1	n/a	chrIV 4,272,674	contains similarity to Pfam domain PF05912 Caenorhabditis elegans protein of unknown function (DUF870) contains similarity to Interpro domain IPR008588 (Protein of unknown function DUF870, Caenorhabditis species)
34	C17A2.4	C17A2.4	n/a	chrII 3,840,560	contains similarity to Cebus apella Galactoside 2-alpha-L-fucosyltransferase 1 (EC 2.4.1.69) (GDP-L-sfucose:beta-D-galactoside 2-alpha-L-fucosyltransferase 1)s(Alpha(1,2)FT 1) (Fucosyltransferase 1).; SW:Q866E8
35	nas-24	F20G2.4	n/a	chrV 13,770,454	nas-24 encodes an astacin-like metalloprotease.
36	F17E9.3	F17E9.3	n/a	chrIV 8,355,135
37	sri-37	D2062.2	n/a	chrII 2,630,401	C. elegans SRI-37 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
38	F18A12.1	F18A12.1	n/a	chrII 3,418,742	F18A12.1 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; F18A12.1 has no clear orthologs in other organisms.
39	C47E12.10	C47E12.10	n/a	chrIV 9,973,388	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domain IPR004296 (Protein of unknown function DUF236)
40	F53E10.4	F53E10.4	n/a	chrV 2,593,813
41	K02A6.2	K02A6.2	n/a	chrX 8,224,536
42	cwp-2	C37H5.11	n/a	chrV 4,842,261	cwp-2 encodes a nematode-specific protein that is coexpressed with lov-1 and pkd-2.
43	F47C12.6	F47C12.6	n/a	chrIV 3,991,939	contains similarity to Pfam domain PF05912 Caenorhabditis elegans protein of unknown function (DUF870) contains similarity to Interpro domain IPR008588 (Protein of unknown function DUF870, Caenorhabditis species)
44	T10G3.1	T10G3.1	n/a	chrV 13,471,322	contains similarity to Saccharomyces cerevisiae interacts with Sin1p; SGD:YER047C
45	ZC328.5	ZC328.5	n/a	chrI 6,406,411
46	W01B6.8	W01B6.8	n/a	chrIV 10,083,904	contains similarity to Xenopus laevis Nuclear/mitotic apparatus protein.; TR:P70012
47	W02B3.7	W02B3.7	n/a	chrIII 691,490	contains similarity to Interpro domain IPR009644 (Fukutin-related)
48	T05A6.4	T05A6.4	n/a	chrII 7,821,360	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
49	K12H6.4	K12H6.4	n/a	chrII 2,823,987
50	T26G10.5	T26G10.5	n/a	chrIII 9,426,015	contains similarity to Streptococcus pyogenes Hypothetical protein SPy0952.; TR:Q9A032