UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F17C8.3	F17C8.3	0	chrIII 4,733,966	contains similarity to Pfam domains PF01958 (Domain of unknown function DUF108) , PF03447 (Homoserine dehydrogenase, NAD binding domain) contains similarity to Interpro domains IPR005106 (Aspartate/homoserine dehydrogenase, NAD-binding), IPR016040 (NAD(P)-binding), IPR002811 (Aspartate dehydrogenase)
2	ZK507.3	ZK507.3	n/a	chrIII 9,102,142	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
3	Y43C5B.3	Y43C5B.3	n/a	chrIV 10,354,101	contains similarity to Pfam domain PF00153 Mitochondrial carrier protein contains similarity to Interpro domains IPR001312 (Hexokinase), IPR001993 (Mitochondrial substrate carrier)
4	T02E1.6	T02E1.6	n/a	chrI 8,211,732	contains similarity to Akodon andinus NADH dehydrogenase subunit 4 (EC 1.6.5.3) (NADH-ubiquinonesoxidoreductase chain 4) (Fragment).; TR:O21539
5	C35E7.9	C35E7.9	n/a	chrI 10,807,562	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein), IPR005819 (Histone H5)
6	F54C1.8	F54C1.8	n/a	chrI 5,005,486
7	C14C10.1	C14C10.1	n/a	chrV 12,589,001	contains similarity to Pfam domain PF00153 Mitochondrial carrier protein contains similarity to Interpro domains IPR001993 (Mitochondrial substrate carrier), IPR000802 (Arsenical pump membrane protein), IPR002113 (Adenine nucleotide translocator 1)
8	cyc-2.2	ZC116.2	n/a	chrV 12,611,951	ZC116.2 encodes, along with E04A4.7, one of two C. elegans cytochrome c proteins; the product of ZC116.2 is predicted to function in the electron transport chain by transferring electrons from respiratory chain Complex III to Complex IV; RNAi screens indicate the ZC116.2 activity is required for embryonic development as well as for normal body size and rates of growth.
9	F59A7.9	F59A7.9	n/a	chrV 2,005,893	contains similarity to Pfam domain PF00291 Pyridoxal-phosphate dependent enzyme contains similarity to Interpro domains IPR005856 (Cysteine synthase K/M), IPR001216 (Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site), IPR005859 (Cysteine synthase A), IPR001926 (Pyridoxal phosphate-dependent enzyme, beta subunit), IPR016040 (NAD(P)-binding)
10	C45G9.9	C45G9.9	n/a	chrIII 5,055,142	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR005819 (Histone H5)
11	ZK546.7	ZK546.7	n/a	chrII 4,931,532	contains similarity to Interpro domain IPR000694 (Proline-rich region)
12	F11G11.5	F11G11.5	n/a	chrII 4,858,520	contains similarity to Interpro domains IPR003267 (Small proline-rich), IPR000694 (Proline-rich region)
13	K07A1.4	K07A1.4	n/a	chrI 9,589,308	contains similarity to Mycobacterium tuberculosis TcrZ protein (Fragment).; TR:Q50810
14	F49F1.1	F49F1.1	n/a	chrIV 4,118,476	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
15	F31E8.5	F31E8.5	n/a	chrII 6,806,093
16	C18H7.4	C18H7.4	n/a	chrIV 594,283	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
17	F26F4.2	F26F4.2	n/a	chrIII 4,911,567	F26F4.2 encodes a novel protein with high similarity to C. elegans F37A8.1 and C. briggsae CBG18186.
18	C34D4.3	C34D4.3	n/a	chrIV 7,153,905	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
19	C04F12.6	C04F12.6	n/a	chrI 9,693,209	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR013303 (Wnt-14 protein)
20	wht-5	F19B6.4	n/a	chrIV 12,338,972	C. elegans WHT-5 protein; contains similarity to Pfam domains PF01061 (ABC-2 type transporter) , PF00005 (ABC transporter) contains similarity to Interpro domains IPR003439 (ABC transporter-like), IPR003593 (AAA+ ATPase, core), IPR013525 (ABC-2 type transporter)
21	T22C1.9	T22C1.9	n/a	chrI 7,959,350	contains similarity to Saccharomyces cerevisiae Nuclear Assembly Factor; SGD:YNL124W
22	exl-1	F26H11.5	n/a	chrII 14,412,734	exl-1 encodes a putative chloride intracellular channel (CLIC) paralogous to EXC-4; transgenic EXL-1 can partially rescue the exc-4(rh133) mutant phenotype when its expression is driven with an exc-4 promoter; EXL-1 is localized to lysosomes in intestinal cells and coelomocytes, endoplasmic reticulum in coelomocytes, Golgi apparatus in muscle and the neurons PVD and CAN, plasma membrane in muscle arms, and to dense bodies linking muscle cytoskeleton to hypodermis through muscle cell membranes; EXL-1 has an N-terminal PTM domain required for its membrane targeting, and a C-terminal domain resembling omega-type glutathione-S-transferases; EXL-1 has no known function in vivo, and exl-1(ok857) mutants have no obvious phenotype.
23	cpb-2	C30B5.3	n/a	chrII 6,193,942	cpb-2 encodes a cytoplasmic polyadenylation element binding (CPEB) protein homolog, expressed specifically in the spermatogenic germ line; CPB-2 is dispensable for oogenesis, in contrast to CPEBs in vertebrates (Xenopus), arthropods (Drosophila), and molluscs (Spisula), which all participate in oogenesis.
24	C54D10.4	C54D10.4	n/a	chrV 12,420,859	contains similarity to Interpro domain IPR008952 (Tetraspanin)
25	Y106G6D.4	Y106G6D.4	n/a	chrI 10,115,663	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
26	C24A11.1	C24A11.1	n/a	chrI 5,402,352
27	spe-11	F48C1.7	n/a	chrI 5,331,412	spe-11 encodes a novel protein that is required for early embryonic development and for regulating the dynamic morphology of sperm pseudopods; although the precise biological role of SPE-11 is not yet known, SPE-11 is one of the few paternally provided proteins known to be essential for embryogenesis, and may constitute a sperm-associated factor required for oocyte activation; SPE-11 is first detected in the nuclei of primary spermatocytes and then remains tightly associated with sperm chromatin until fertilization at which point it appears to be degraded.
28	Y106G6H.13	Y106G6H.13	n/a	chrI 10,471,577	contains similarity to Bacillus cereus Hypothetical membrane spanning protein.; TR:Q813N7
29	F13G11.2	F13G11.2	n/a	chrIV 14,633,712	contains similarity to Rattus norvegicus Chondroadherin precursor (Cartilage leucine-rich protein).; SW:CHAD_RAT
30	D1081.5	D1081.5	n/a	chrI 8,481,820	contains similarity to Interpro domain IPR009061 ()
31	C37A2.3	C37A2.3	n/a	chrI 6,785,976	contains similarity to Pfam domains PF08028 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02770 (Acyl-CoA dehydrogenase, middle domain) , PF00441 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02771 (Acyl-CoA dehydrogenase, N-terminal domain) contains similarity to Interpro domains IPR013107 (Acyl-CoA dehydrogenase, type 2, C-terminal), IPR006090 (Acyl-CoA oxidase/dehydrogenase, type 1), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR006091 (Acyl-CoA dehydrogenase/oxidase, central region), IPR006089 (Acyl-CoA dehydrogenase, conserved site), IPR013764 (Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, middle and N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR006092 (Acyl-CoA dehydrogenase, N-terminal)
32	F18A1.1	F18A1.1	n/a	chrII 7,687,417
33	C47A4.5	C47A4.5	n/a	chrIV 13,745,790	contains similarity to Saccharomyces cerevisiae N-terminal domain appears to be involved in cellular responsiveness to RAS.; SGD:YNL138W
34	C03B8.3	C03B8.3	n/a	chrIII 7,712,627
35	C16A11.7	C16A11.7	n/a	chrII 4,256,423
36	B0218.7	B0218.7	n/a	chrIV 8,165,316
37	C03B8.1	C03B8.1	n/a	chrIII 7,716,961
38	K07A1.5	K07A1.5	n/a	chrI 9,591,179	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR001859 (Ribosomal protein P2), IPR003060 (Pyocin S killer protein)
39	C07G1.6	C07G1.6	n/a	chrIV 8,209,489
40	C10H11.7	C10H11.7	n/a	chrI 4,720,444	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
41	clec-67	F56D6.2	n/a	chrIV 3,923,599	C. elegans CLEC-67 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
42	C36H8.1	C36H8.1	n/a	chrIV 12,743,886	contains similarity to Pfam domains PF03134 (TB2/DP1, HVA22 family) , PF00635 (MSP (Major sperm protein) domain) contains similarity to Interpro domains IPR008962 (PapD-like), IPR000694 (Proline-rich region), IPR000535 (Major sperm protein), IPR004345 (TB2/DP1 and HVA22 related protein)
43	nspb-7	C01G12.2	n/a	chrII 14,578,358	C. elegans NSPB-7 protein ;
44	T05F1.8	T05F1.8	n/a	chrI 9,643,072	contains similarity to Pfam domain PF00153 Mitochondrial carrier protein contains similarity to Interpro domains IPR002067 (Mitochondrial carrier protein), IPR001993 (Mitochondrial substrate carrier), IPR000802 (Arsenical pump membrane protein), IPR002113 (Adenine nucleotide translocator 1)
45	clec-155	T04A8.3	n/a	chrIII 4,684,119	C. elegans CLEC-155 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
46	F26B1.1	F26B1.1	n/a	chrI 6,328,529	contains similarity to Homo sapiens hypothetical protein; ENSEMBL:ENSP00000352916
47	ssq-3	ZC477.1	n/a	chrIV 7,112,230	C. elegans SSQ-3 protein; contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR006206 (Mevalonate and galactokinase), IPR001553 (RecA bacterial DNA recombination), IPR013286 (Annexin, type VII)
48	ZK507.1	ZK507.1	n/a	chrIII 9,100,387	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
49	F53G12.8	F53G12.8	n/a	chrI 114,244	contains similarity to Homo sapiens Putative uncharacterized protein (Fragment); ENSEMBL:ENSP00000333119
50	C05B5.2	C05B5.2	n/a	chrIII 9,999,425	contains similarity to Agrobacterium tumefaciens Peptide synthetase.; TR:Q8UBE4