UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	nhr-281	F16B12.8	0	chrX 14,112,277	C. elegans NHR-281 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
2	nhr-79	T26H2.9	0.000003	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	Y40B1A.1	Y40B1A.1	n/a	chrI 13,346,056	contains similarity to Lampropeltis getula nigrita Cytochrome b.; TR:Q953V8
4	srh-209	ZK262.11	n/a	chrV 18,404,256	C. elegans SRH-209 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
5	F08H9.4	F08H9.4	n/a	chrV 14,463,959	F08H9.4 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the excretory canal and ventral nerve-cord neurons), and its expression is only mildly induced by heat shock; however, F08H9.4 expression is increased by heat shock, is induced in a new tissue type (intestine) by heat shock, and probably aids heat shock resistance, since F08H9.4(RNAi) animals die as embryos in heat shock at a higher rate than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP.
6	srh-258	T06E6.7	n/a	chrV 15,405,935	C. elegans SRH-258 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR000175 (Sodium:neurotransmitter symporter), IPR003002 (7TM chemoreceptor, subfamily 1)
7	C03C10.7	C03C10.7	n/a	chrIII 4,096,446	contains similarity to Saccharomyces cerevisiae Profilin synthetic lethal protein, has region of coiled-coil structure; subunit of the Exocyst complex--the Exocyst complex contains the gene products encoded by SEC3, SEC5, SEC6, SEC8, SEC10, SEC15 and EXO70 and is required for exocytosis; SGD:YER008C
8	E02H4.4	E02H4.4	n/a	chrX 14,259,690	contains similarity to Arabidopsis thaliana Uncharacterized protein At1g15830.1.; TR:Q3EDB7
9	F08B4.4	F08B4.4	n/a	chrIV 8,679,036
10	R07C3.14	R07C3.14	n/a	chrII 929,840
11	sri-13	M01G12.13	n/a	chrI 12,141,648	C. elegans SRI-13 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
12	ZC412.1	ZC412.1	n/a	chrV 14,855,683	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000611 (Neuropeptide Y receptor), IPR000276 (GPCR, rhodopsin-like)
13	F33D11.8	F33D11.8	n/a	chrI 5,854,677
14	C17G1.5	C17G1.5	n/a	chrX 9,943,135	contains similarity to Hepatitis C virus Non-structural protein 5b (Genome polyprotein) (Fragment).; TR:Q8V1C2
15	nhr-148	C03G6.10	4e-18	chrV 7,342,974	C. elegans NHR-148 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
16	ceh-17	D1007.1	n/a	chrI 4,569,495	ceh-17 encodes a phox-2-like homeodomain protein that is a member of the Q50 paired-like class of homeobox proteins and the vertebrate orthologue of Phox2a and Phox2b; that affects ALA and SIA axonal development; ceh-17 affects ALA and SIA antero-posterior axonal growth and navigation, and is expressed in five neurons of the ring ganglia (ALA and the 4 SIAs) with strongest expression in embryos and in L1 stage larvae.
17	F38E9.4	F38E9.4	n/a	chrX 16,452,168
18	col-52	D1007.2	n/a	chrI 4,572,052	C. elegans COL-52 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
19	R03H10.5	R03H10.5	n/a	chrII 4,170,159	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
20	grl-20	C23H5.9	n/a	chrIV 2,127,497	grl-20 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central low-complexity region, and a C-terminal Ground-like (Grl) domain; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
21	F19B10.5	F19B10.5	n/a	chrII 3,656,709
22	glb-15	F35B12.8	n/a	chrV 11,617,517	glb-15 encodes a globin with no obvious function in mass RNAi assays.
23	srh-19	F19G12.5	n/a	chrX 1,414,840	C. elegans SRH-19 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
24	C50E3.8	C50E3.8	n/a	chrV 7,598,180
25	R11D1.4	R11D1.4	n/a	chrV 12,713,623	contains similarity to Xenopus laevis Similar to kinesin-like 1.; TR:Q8AVK8
26	srh-203	F20E11.10	n/a	chrV 17,455,364	C. elegans SRH-203 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
27	C17H1.6	C17H1.6	n/a	chrI 13,131,624	contains similarity to Danio rerio Arginine and glutamate-rich protein 1-B.; SW:Q6P5L7
28	F21D12.2	F21D12.2	n/a	chrII 7,318,858
29	F44A2.7	F44A2.7	n/a	chrV 9,322,227
30	T04C12.1	T04C12.1	n/a	chrV 11,058,930	n/a
31	T25D1.1	T25D1.1	n/a	chrX 16,520,133
32	C34D10.1	C34D10.1	n/a	chrX 8,030,420	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
33	srg-40	T19C4.4	n/a	chrV 11,163,867	C. elegans SRG-40 protein; contains similarity to Interpro domains IPR000500 (Connexins), IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
34	C17F4.3	C17F4.3	n/a	chrII 3,241,131
35	F07C4.11	F07C4.11	n/a	chrV 7,642,685	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domains IPR000104 (Antifreeze protein, type I), IPR003582 (Metridin-like ShK toxin)
36	T08G5.2	T08G5.2	n/a	chrV 14,025,155	contains similarity to Homo sapiens Galactoside 2-alpha-L-fucosyltransferase 1; ENSEMBL:ENSP00000312021
37	ugt-36	F09G2.6	n/a	chrV 7,168,088	C. elegans UGT-36 protein; contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) contains similarity to Interpro domains IPR008081 (Cytoplasmic FMR1-interacting), IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)
38	C39D10.5	C39D10.5	n/a	chrX 7,891,348
39	T22D1.6	T22D1.6	n/a	chrIV 6,899,771
40	C49F5.5	C49F5.5	n/a	chrX 11,986,477	contains similarity to Pfam domain PF02135 TAZ zinc finger contains similarity to Interpro domain IPR000197 (Zinc finger, TAZ-type)
41	C10E2.2	C10E2.2	n/a	chrX 16,746,897	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
42	clec-198	C49C3.13	n/a	chrIV 17,349,079	C. elegans CLEC-198 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
43	T25B6.5	T25B6.5	n/a	chrX 9,021,091
44	F49C12.10	F49C12.10	n/a	chrIV 9,318,735	contains similarity to Pfam domain PF08241 Methyltransferase domain contains similarity to Interpro domain IPR013216 (Methyltransferase type 11)
45	srj-27	T01G5.3	n/a	chrV 15,126,838	C. elegans SRJ-27 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
46	T22B2.2	T22B2.2	n/a	chrX 3,922,438
47	F54B8.4	F54B8.4	n/a	chrV 15,816,808	The F54B8.4 gene encodes a homolog of Death Associated Protein 1 (DAP-1) protein that may be involved in apoptosis.
48	F45F2.1	F45F2.1	n/a	chrV 8,538,519	contains similarity to Pfam domain PF03189 Protein of unknown function, DUF270 contains similarity to Interpro domain IPR004878 (Protein of unknown function DUF270)
49	gcy-2	R134.2	n/a	chrII 9,509,771	gcy-2 encodes a predicted transmembrane guanylyl cyclase; as loss of gcy-2 activity via RNA-mediated interference does not result in any abnormalities, the precise role of GCY-2 in C. elegans development and/or behavior is not yet known; by sequence similarity, however, GCY-2 can be predicted to function in chemosensory signal transduction.
50	F46B3.2	F46B3.2	n/a	chrV 20,594,388	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)