UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	msp-74	F09C12.7	1.9999999999999998e-42	chrII 5,115,201	msp-74 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
2	bra-2	F23H11.1	n/a	chrIII 911,744	The bra-2 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1), paralogous to bra-1, that may act upon the SMA-6 TGF-beta signalling pathway
3	gst-9	R05F9.5	n/a	chrII 4,892,523	gst-9 encodes a predicted glutathione S-transferase; by homology, GST-9 is predicted to play a role in the detoxification of environmental toxins and xenobiotics by transferring glutathione to reactive electrophilic compounds; however, as loss of gst-9 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of GST-9 in C. elegans development and/or behavior is not yet known.
4	nspa-8	W06A7.5	n/a	chrV 14,826,947	C. elegans NSPA-8 protein ;
5	msp-49	C34F11.6	1.9999999999999998e-42	chrII 5,194,543	msp-49 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
6	C02F5.5	C02F5.5	n/a	chrIII 8,236,454
7	nspd-4	T23B7.1	n/a	chrII 4,842,734	C. elegans NSPD-4 protein; contains similarity to Pfam domain PF05611 Caenorhabditis elegans protein of unknown function (DUF780) contains similarity to Interpro domain IPR008498 (Protein of unknown function DUF780, Caenorhabditis species)
8	sss-1	F32B6.5	n/a	chrIV 9,893,216	C. elegans SSS-1 protein ;
9	ssp-9	E03H12.10	n/a	chrIV 4,994,521	C. elegans SSP-9 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
10	nspa-1	H12D21.1	n/a	chrV 14,886,813	C. elegans NSPA-1 protein ;
11	msp-79	T13F2.10	5e-42	chrIV 9,766,938	msp-79 encodes a member of the major sperm protein family.
12	F37A8.1	F37A8.1	n/a	chrIII 3,928,769	contains similarity to Rattus norvegicus Myotonic dystrophy kinase-related Cdc42-binding kinase MRCK-beta.; TR:O54875
13	F27C1.1	F27C1.1	n/a	chrI 5,435,299
14	C10G11.9	C10G11.9	n/a	chrI 6,274,923	contains similarity to Urechis caupo Sperm acrosomal protein.; TR:A4GND9
15	col-184	F15A2.1	n/a	chrX 13,469,888	C. elegans COL-184 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR005404 (Potassium channel, voltage dependent, Kv3.3), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
16	ZK938.1	ZK938.1	n/a	chrII 9,830,005	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
17	ZK1251.1	ZK1251.1	n/a	chrIV 9,683,245	contains similarity to Pfam domains PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone) , PF00125 (Core histone H2A/H2B/H3/H4) contains similarity to Interpro domains IPR009072 (Histone-fold), IPR007125 (Histone core), IPR002119 (Histone H2A), IPR003958 (Transcription factor CBF/NF-Y/archaeal histone)
18	nspd-1	ZK484.8	n/a	chrI 6,097,668	C. elegans NSPD-1 protein; contains similarity to Pfam domain PF05611 Caenorhabditis elegans protein of unknown function (DUF780) contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR008498 (Protein of unknown function DUF780, Caenorhabditis species)
19	T08B2.12	T08B2.12	n/a	chrI 6,231,810	contains similarity to Equine herpesvirus 1 Glycoprotein X precursor.; SW:Q6S6W0
20	msp-32	R05F9.3	1.9999999999999998e-42	chrII 4,898,889	msp-32 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-32 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the msp family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
21	F17E9.5	F17E9.5	n/a	chrIV 8,346,163
22	nspa-3	ZC412.7	n/a	chrV 14,880,465	C. elegans NSPA-3 protein ;
23	nspa-5	ZC412.6	n/a	chrV 14,878,391	C. elegans NSPA-5 protein ;
24	C04F12.7	C04F12.7	n/a	chrI 9,696,226	contains similarity to Legionella pneumophila CITA.; TR:O54543
25	msp-65	ZK354.1	1.9999999999999998e-42	chrIV 5,316,705	msp-65 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
26	clec-79	F47C12.4	n/a	chrIV 3,974,525	C. elegans CLEC-79 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR000538 (Link), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
27	C49H3.3	C49H3.3	n/a	chrIV 7,924,622	contains similarity to Xenopus tropicalis UPF0446 protein C12orf31 homolog.; SW:Q6NVR5
28	col-179	C34F6.3	n/a	chrX 11,201,934	C. elegans COL-179 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR000596 (Cholecystokinin receptor, type A), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
29	R09E10.6	R09E10.6	n/a	chrIV 10,293,542	contains similarity to Coturnix coturnix Nectinepsin.; TR:Q90351
30	ssq-4	T28H11.1	n/a	chrIV 5,017,101	C. elegans SSQ-4 protein; contains similarity to Interpro domains IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR002952 (Eggshell protein), IPR000817 (Prion protein), IPR000103 (Pyridine nucleotide-disulphide oxidoreductase, class-II), IPR000158 (Cell division protein FtsZ, N-terminal), IPR013286 (Annexin, type VII)
31	msp-81	K07F5.1	1.9999999999999998e-42	chrIV 9,836,198	msp-81 encodes a member of the major sperm protein family.
32	F35H8.1	F35H8.1	n/a	chrII 9,552,878	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8ILJ6
33	T25B9.6	T25B9.6	n/a	chrIV 10,759,435	contains similarity to Interpro domain IPR006162 (Phosphopantetheine attachment site)
34	ZC168.6	ZC168.6	n/a	chrIV 10,738,430	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
35	T28H11.7	T28H11.7	n/a	chrIV 5,015,779	contains similarity to Interpro domain IPR004148 (BAR)
36	sss-2	F47B8.11	n/a	chrV 14,346,480	C. elegans SSS-2 protein ;
37	F08H9.2	F08H9.2	n/a	chrV 14,460,857	contains similarity to Interpro domain IPR004064 (EDG-6 sphingosine 1-phosphate receptor)
38	msp-64	ZK1248.6	1.9999999999999998e-42	chrII 5,810,101	msp-64 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
39	mab-9	T27A1.6	n/a	chrII 518,813	mab-9 encodes a member of the T-box family of transcriptional regulators containing a 200-amino acid T-box DNA-binding domain most similar to mouse Brachyury; mab-9 is involved in hindgut and male tail development, specifically affecting the fate of two posterior blast cells in the hindgut, B and F; in the male this results in a grossly abnormal tail lacking spicules, and renders them incapable of mating; in the hermaphrodite this results in hindgut defects; mab-9 may also be part of a network of T-box genes that includes tbx-8, tbx-9 and vab-7 and is important for the correct patterning of posterior cells in the developing embryo; mab-9 affects movement to some extent though the basis for this defect is unknown; MAB-9 localizes to the nucleus of B and F and their descendents during development.
40	ZK484.5	ZK484.5	n/a	chrI 6,087,568
41	C10G11.1	C10G11.1	n/a	chrI 6,307,930
42	C25A8.1	C25A8.1	0.0001	chrIV 7,011,175
43	W09C3.7	W09C3.7	n/a	chrI 4,714,903
44	nspa-9	C40H5.1	n/a	chrX 11,739,026	C. elegans NSPA-9 protein ;
45	ssq-1	K07F5.11	n/a	chrIV 9,853,029	C. elegans SSQ-1 protein; contains similarity to Interpro domain IPR002952 (Eggshell protein)
46	F32B5.4	F32B5.4	n/a	chrI 2,692,274
47	K06A5.2	K06A5.2	n/a	chrI 6,468,758	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
48	R10E9.2	R10E9.2	n/a	chrIII 3,963,390	contains similarity to Arabidopsis thaliana Hypothetical protein (At2g34570).; TR:Q8GWS9
49	msp-142	K05F1.2	1.9999999999999998e-42	chrII 5,798,084	msp-142 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
50	W03D8.10	W03D8.10	n/a	chrI 2,786,824	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)