UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F09A5.3	F09A5.3	0	chrX 13,151,561	contains similarity to Plasmodium falciparum Normocyte-binding protein 1.; TR:Q8WRS5
2	sra-25	T26E3.9	n/a	chrI 12,687,150	C. elegans SRA-25 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR000344 (Nematode chemoreceptor, Sra)
3	T08D2.8	T08D2.8	n/a	chrX 196,174	contains similarity to Pfam domain PF02985 HEAT repeat contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR000357 (HEAT), IPR016024 (Armadillo-type fold)
4	F55C12.6	F55C12.6	n/a	chrII 5,875,271	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domain IPR009658 (Protein of unknown function DUF1248)
5	srj-11	T28A11.12	n/a	chrV 3,242,029	C. elegans SRJ-11 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
6	T23H2.4	T23H2.4	n/a	chrI 6,455,456
7	T10B5.8	T10B5.8	n/a	chrV 1,843,425	contains similarity to Pfam domain PF00724 NADH:flavin oxidoreductase / NADH oxidase family contains similarity to Interpro domains IPR013785 (Aldolase-type TIM barrel), IPR001155 (NADH:flavin oxidoreductase/NADH oxidase, N-terminal)
8	Y39A1A.16	Y39A1A.16	n/a	chrIII 10,680,725	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
9	T14E8.2	T14E8.2	n/a	chrX 6,542,867	contains similarity to Interpro domain IPR002172 (Low density lipoprotein-receptor, class A, cysteine-rich)
10	K03D7.8	K03D7.8	n/a	chrV 17,490,522
11	srw-132	T05B4.5	n/a	chrV 4,107,240	C. elegans SRW-132 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
12	F02D10.6	F02D10.6	n/a	chrX 13,450,586	contains similarity to Cryptophlebia leucotreta granulosis virus Hypothetical protein.; TR:Q7T5R9
13	H14E04.4	H14E04.4	n/a	chrIII 2,391,147
14	Y57G11C.7	Y57G11C.7	n/a	chrIV 14,755,336	contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
15	F02H6.1	F02H6.1	n/a	chrIV 14,200,489	contains similarity to Human herpesvirus 8 ORF73.; TR:Q91LX9
16	C47F8.6	C47F8.6	n/a	chrI 12,320,092	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
17	F30F8.1	F30F8.1	n/a	chrI 7,834,052	contains similarity to Mus musculus Nuclear factor of activated T cells 5 (T cell transcription factorsNFAT5) (NF-AT5) (Rel domain-containing transcription factor NFAT5).; SW:NFT5_MOUSE
18	srx-111	T24E12.4	n/a	chrII 3,758,519	C. elegans SRX-111 protein ;
19	srw-22	T10H4.3	n/a	chrV 15,269,194	C. elegans SRW-22 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
20	clec-50	W04E12.8	n/a	chrV 19,749,271	C. elegans CLEC-50 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR000480 (Glutelin), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002353 (Type II antifreeze protein)
21	srj-10	F14H3.1	n/a	chrV 16,073,333	C. elegans SRJ-10 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
22	srx-7	C14C6.1	n/a	chrV 561,828	C. elegans SRX-7 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR002651 (Protein of unknown function DUF32), IPR000276 (GPCR, rhodopsin-like)
23	srx-22	F31F4.3	n/a	chrV 680,688	C. elegans SRX-22 protein ;
24	T08G5.1	T08G5.1	n/a	chrV 14,019,744	contains similarity to Saccharomyces cerevisiae Protein that may function as a cochaperone, as suggested by the presence of a DnaJ-like domain; SGD:YNL227C
25	B0035.6	B0035.6	n/a	chrIV 11,322,187	contains similarity to Saccharomyces cerevisiae Structural maintenance of chromosomes (SMC) protein; SGD:YOL034W
26	Y57G7A.6	Y57G7A.6	n/a	chrII 1,283,801	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
27	K02E2.1	K02E2.1	n/a	chrV 20,348,590	contains similarity to Salmo salar NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3).; SW:NU2M_SALSA
28	ugt-6	ZC455.4	n/a	chrV 12,796,799	C. elegans UGT-6 protein; contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) contains similarity to Interpro domains IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)
29	F36F12.8	F36F12.8	n/a	chrV 2,091,148	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
30	F56D6.6	F56D6.6	n/a	chrIV 3,904,376
31	R10D12.6	R10D12.6	n/a	chrV 13,949,458	contains similarity to Pfam domain PF01679 Uncharacterized protein family UPF0057 contains similarity to Interpro domain IPR000612 (Protein of unknown function UPF0057)
32	srw-98	K04F1.3	n/a	chrV 1,677,402	C. elegans SRW-98 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
33	C10A4.6	C10A4.6	n/a	chrX 7,391,386
34	cpb-3	B0414.5	n/a	chrI 5,790,196	cpb-3 encodes a CPEB orthologous to Drosophila ORB, zebrafish ZORBA, and human CPEB1, and paralogous to FOG-1 and CPB-1/2; CPB-3 inhibits physiological apoptosis in oocytes, keeping it down to a normal level of ~50% in hermaphrodite gonads; independently of apoptosis, CPB-3 is also required for normal oogenesis, sperm/oocyte switching (upstream of FEM-3), and the transistion from mitosis to meiosis by oocytes (in parallel with GLD-3); cpb-3(RNAi) results in elevated (though not 100%) physiological germ cell apoptosis, independent of CEP-1; in cpb-3(RNAi) animals, excess physiological apoptosis actually promotes fertility, since cpb-3(RNAi) hermaphrodites have larger brood sizes than those with apoptosis suppressed by ced-3(n717), and aging ced-3(n717);cpb-3(RNAi) animals have abnormal oocytes that fail to exit pachytene and proceed through diakinesis; CPB-3 is mainly cytoplasmic, and strongly expressed in pachytene oocytes; cpb-3(bt17);daz-1(tj3) hermaphrodites have a synthetic phenotype of total sterility and masculinization; CPB-3 colocalizes with DAZ-1 in vivo, coimmunoprecipitates with DAZ-1, and binds DAZ-1 in two-hybrid assays.
35	xnp-1	B0041.7	n/a	chrI 4,668,742	xnp-1 encodes an ATP-dependent DNA helicase of the SNF2 family that is orthologous to human XNP/ATR-X, which is associated with a number of X-linked mental retardation syndromes; in C. elegans, xnp-1 activity is required at high temperatures for embryogenesis, somatic gonad development, fertility, and vulval morphogenesis; in addition, animals doubly mutant for xnp-1 and lin-35/Rb, hpl-2/HP1, or nucleosome remodelling and histone deacetylase (NuRD) complex members such as lin-53 and let-418, display larval arrest with growth cessation but continued cell proliferation; xnp-1 is also required, with lin-35/Rb and hpl-2/HP1, for proper regulation of transgene expression; xnp-1 mRNA, detectable in embryos and the germline by in situ hybridization, is expressed at highest levels in embryos with decreasing levels seen in successive larval stages; xnp-1 transcriptional reporter fusions exhibit strong expression beginning at mid-embryogenesis but fading by embryonic morphogenesis; at hatching, expression is observed in all dividing cells including the P lineage, and at later larval stages expression is observed in the vulval precursor cells.
36	E02H9.6	E02H9.6	n/a	chrIII 2,439,204	contains similarity to Interpro domain IPR000694 (Proline-rich region)
37	sri-6	T09E8.5	n/a	chrV 13,186,537	C. elegans SRI-6 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
38	C40H1.3	C40H1.3	n/a	chrIII 9,328,239	contains similarity to Homo sapiens Protein; VG:OTTHUMP00000003630
39	F18E2.1	F18E2.1	n/a	chrV 12,758,672	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR015914 (Purple acid phosphatase, N-terminal), IPR004843 (Metallophosphoesterase)
40	rpb-6	C06A1.5	n/a	chrII 10,579,552	C. elegans RPB-6 protein; contains similarity to Pfam domain PF01192 RNA polymerase Rpb6 contains similarity to Interpro domains IPR006110 (RNA polymerase Rpb6), IPR002048 (Calcium-binding EF-hand), IPR006111 (DNA-directed RNA polymerase, 14 to 18 kDa subunit), IPR012293 (RNA polymerase subunit, RPB6/omega)
41	C34D4.10	C34D4.10	n/a	chrIV 7,120,692
42	F14F9.6	F14F9.6	n/a	chrV 5,148,306
43	Y62H9A.11	Y62H9A.11	n/a	chrX 11,906,196
44	T22F7.3	T22F7.3	n/a	chrIII 520,622	contains similarity to Pfam domains PF01683 (EB module) , PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain) (5)contains similarity to Interpro domains IPR002223 (Proteinase inhibitor I2, Kunitz metazoa), IPR006150 (Cysteine-rich repeat), IPR006149 (Nematode-specific EB region)
45	C12D5.5	C12D5.5	n/a	chrV 7,668,594
46	M01G12.7	M01G12.7	n/a	chrI 12,115,167	contains similarity to Arabidopsis thaliana Hypothetical protein.; TR:Q9LZ50
47	srsx-11	C13D9.4	n/a	chrV 4,978,533	C. elegans SRSX-11 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
48	srg-2	C18F10.5	n/a	chrIII 6,259,346	srg-2 encodes a predicted seven transmembrane domain G protein-coupled chemosensory receptor; an SRG-2::GFP fusion protein is expressed exclusively in the cilia of ASK sensory neurons, which are believed to be involved in chemotaxis to lysine and sensory regulation of egg laying; localization of SRG-2 to ASK cilia does not appear to depend upon wild-type activity of either odr-4 or odr-8.
49	Y47H9C.12	Y47H9C.12	n/a	chrI 11,896,823	contains similarity to Escherichia coli O6 FMN reductase (EC 1.5.1.29).; TR:Q8FJ92
50	Y40H7A.3	Y40H7A.3	n/a	chrIV 15,162,987	contains similarity to Pfam domain PF05050 Protein of unknown function (DUF672) contains similarity to Interpro domain IPR007744 (Protein of unknown function DUF672)