UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F02H6.1	F02H6.1	0	chrIV 14,200,489	contains similarity to Human herpesvirus 8 ORF73.; TR:Q91LX9
2	F30F8.1	F30F8.1	n/a	chrI 7,834,052	contains similarity to Mus musculus Nuclear factor of activated T cells 5 (T cell transcription factorsNFAT5) (NF-AT5) (Rel domain-containing transcription factor NFAT5).; SW:NFT5_MOUSE
3	F18E2.1	F18E2.1	n/a	chrV 12,758,672	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR015914 (Purple acid phosphatase, N-terminal), IPR004843 (Metallophosphoesterase)
4	T09E11.9	T09E11.9	n/a	chrI 12,348,814	contains similarity to Pfam domain PF02485 Core-2/I-Branching enzyme contains similarity to Interpro domain IPR003406 (Glycosyl transferase, family 14)
5	T20D4.6	T20D4.6	n/a	chrV 3,411,676	contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin-like, C-terminal), IPR014752 (Arrestin, C-terminal), IPR011021 (Arrestin-like, N-terminal)
6	bath-13	F40B1.1	n/a	chrII 2,521,505	C. elegans BATH-13 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain) , PF00917 (MATH domain) contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
7	T10E10.4	T10E10.4	n/a	chrX 6,318,637	T10E10.4 encodes a large (966-residue) protein, predicted to be secreted, with two N-terminal chitin-binding peritrophin-A domains followed by 14 cysteine-rich domains and one C-terminal EB module; the general organization of T10E10.4 protein resembles that of K04H4.2; T10E10.4 has no obvious function in mass RNAi assays but, like CEJ-1 and CPG-2, might participate in chitin synthesis.
8	C29E6.4	C29E6.4	n/a	chrIV 11,881,077	contains similarity to Pfam domain PF00024 PAN domain contains similarity to Interpro domains IPR003609 (Apple-like), IPR003014 (N/apple PAN), IPR001507 (Endoglin/CD105 antigen)
9	F27C1.6	F27C1.6	n/a	chrI 5,424,977	contains similarity to Pfam domain PF04615 Utp14 protein contains similarity to Interpro domain IPR006709 (Small-subunit processome, Utp14)
10	unc-8	R13A1.4	n/a	chrIV 7,200,978	unc-8 encodes an amiloride-sensitive DEG/ENaC cation-selective channel subunit orthologous to human ENaCB (OMIM:600760, associated with Liddle syndrome, an autosomal dominant form of hypertension); UNC-8 is predicted to function as part of a mechanically gated channel that responds to stretch, and is required for modulating the sinusoidal body wave that is characteristic of C. elegans locomotion; unc-8 interacts genetically with unc-1 and unc-24, which encode stomatin-like proteins, and with mec-6, which encodes a paraoxonase; UNC-8 is expressed in motor neurons, sensory neurons, and interneurons in the nerve ring; UNC-8 may form a channel with the degenerin DEL-1, with which it is coexpressed in ventral cord motor neurons.
11	C47F8.6	C47F8.6	n/a	chrI 12,320,092	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
12	Y56A3A.30	Y56A3A.30	n/a	chrIII 11,976,478	contains similarity to Drosophila melanogaster Flybase gene name is CG6004-PB;; FLYBASE:CG6004
13	F41H8.1	F41H8.1	n/a	chrV 834,574	contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
14	fbxa-157	C06H5.2	n/a	chrV 17,900,819	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
15	H20E11.2	H20E11.2	n/a	chrIV 6,828,617	contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domains IPR000859 (CUB), IPR001778 (Pollen allergen Poa pIX/Phl pVI, C-terminal), IPR003366 (CUB-like region)
16	D2089.3	D2089.3	n/a	chrII 10,663,519	contains similarity to Homo sapiens hypothetical protein LOC150383; ENSEMBL:ENSP00000325301
17	npp-12	T23H2.1	n/a	chrI 6,450,639	npp-12 encodes Gp210, an evolutionarily conserved membrane protein of the nuclear pore complex (NPC); NPP-12 is required for embryonic viability and normal nuclear membrane structures.
18	C33H5.1	C33H5.1	n/a	chrIV 7,809,904	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
19	Y43F4A.3	Y43F4A.3	n/a	chrIII 13,240,329	contains similarity to Interpro domain IPR001878 (Zinc finger, CCHC-type)
20	srh-247	C31B8.13	n/a	chrV 2,933,658	C. elegans SRH-247 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
21	sra-34	B0304.7	n/a	chrII 4,542,754	C. elegans SRA-34 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
22	cids-1	C02F5.4	n/a	chrIII 8,245,008	C. elegans CIDS-1 protein; contains similarity to Pfam domain PF04818 Protein of unknown function, DUF618 contains similarity to Interpro domains IPR006569 (Regulation of nuclear pre-mRNA protein), IPR006903 (Protein of unknown function DUF618), IPR008942 (ENTH/VHS)
23	F09A5.3	F09A5.3	n/a	chrX 13,151,561	contains similarity to Plasmodium falciparum Normocyte-binding protein 1.; TR:Q8WRS5
24	T12E12.1	T12E12.1	n/a	chrIV 5,554,964	contains similarity to Pfam domain PF01485 IBR domain contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR002867 (Zinc finger, C6HC-type)
25	F55C12.6	F55C12.6	n/a	chrII 5,875,271	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domain IPR009658 (Protein of unknown function DUF1248)
26	T23H2.4	T23H2.4	n/a	chrI 6,455,456
27	C40H1.3	C40H1.3	n/a	chrIII 9,328,239	contains similarity to Homo sapiens Protein; VG:OTTHUMP00000003630
28	F15A8.7	F15A8.7	n/a	chrX 4,443,129	contains similarity to Interpro domain IPR006954 (Protein of unknown function DUF644)
29	F14F9.6	F14F9.6	n/a	chrV 5,148,306
30	ZC404.10	ZC404.10	n/a	chrV 6,801,320	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
31	Y40H7A.3	Y40H7A.3	n/a	chrIV 15,162,987	contains similarity to Pfam domain PF05050 Protein of unknown function (DUF672) contains similarity to Interpro domain IPR007744 (Protein of unknown function DUF672)
32	Y57G11C.7	Y57G11C.7	n/a	chrIV 14,755,336	contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
33	srw-69	F18E3.5	n/a	chrV 7,428,134	C. elegans SRW-69 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
34	W03C9.1	W03C9.1	n/a	chrII 11,961,452	contains similarity to Homo sapiens RNA binding protein; ENSEMBL:ENSP00000301740
35	F20C5.4	F20C5.4	n/a	chrIV 8,766,075	contains similarity to Pfam domain PF03381 LEM3 (ligand-effect modulator 3) family / CDC50 family contains similarity to Interpro domain IPR005045 (Protein of unknown function DUF284, transmembrane eukaryotic)
36	elpc-3	ZK863.3	n/a	chrV 12,180,438	C. elegans ELPC-3 protein; contains similarity to Pfam domains PF04055 (Radical SAM superfamily) , PF00583 (Acetyltransferase (GNAT) family) contains similarity to Interpro domains IPR007197 (Radical SAM), IPR006638 (Elongator protein 3/MiaB/NifB), IPR000182 (GCN5-related N-acetyltransferase), IPR016181 (Acyl-CoA N-acyltransferase), IPR005910 (Histone acetyltransferase ELP3)
37	T11G6.5	T11G6.5	n/a	chrIV 10,839,263	contains similarity to Interpro domain IPR000694 (Proline-rich region)
38	sel-12	F35H12.3	n/a	chrX 917,054	sel-12 encodes a transmembrane domain protein orthologous to presenilins; during gonadal, germline, and vulval development, sel-12 functions, within receiving cells, to positively regulate lin-12 and glp-1 Notch-like signaling pathways; sel-12 presenilin activity and/or levels are likely regulated by the SET/NAP protein sub-family member encoded by spr-2, as mutations in sel-12 are suppressed by mutations in spr-2; spr-2 regulation of sel-12 occurs in a hop-1 presenilin dependent manner.
39	cpb-3	B0414.5	n/a	chrI 5,790,196	cpb-3 encodes a CPEB orthologous to Drosophila ORB, zebrafish ZORBA, and human CPEB1, and paralogous to FOG-1 and CPB-1/2; CPB-3 inhibits physiological apoptosis in oocytes, keeping it down to a normal level of ~50% in hermaphrodite gonads; independently of apoptosis, CPB-3 is also required for normal oogenesis, sperm/oocyte switching (upstream of FEM-3), and the transistion from mitosis to meiosis by oocytes (in parallel with GLD-3); cpb-3(RNAi) results in elevated (though not 100%) physiological germ cell apoptosis, independent of CEP-1; in cpb-3(RNAi) animals, excess physiological apoptosis actually promotes fertility, since cpb-3(RNAi) hermaphrodites have larger brood sizes than those with apoptosis suppressed by ced-3(n717), and aging ced-3(n717);cpb-3(RNAi) animals have abnormal oocytes that fail to exit pachytene and proceed through diakinesis; CPB-3 is mainly cytoplasmic, and strongly expressed in pachytene oocytes; cpb-3(bt17);daz-1(tj3) hermaphrodites have a synthetic phenotype of total sterility and masculinization; CPB-3 colocalizes with DAZ-1 in vivo, coimmunoprecipitates with DAZ-1, and binds DAZ-1 in two-hybrid assays.
40	Y73C8C.10	Y73C8C.10	n/a	chrV 3,126,667	contains similarity to Pfam domain PF00724 NADH:flavin oxidoreductase / NADH oxidase family contains similarity to Interpro domains IPR013785 (Aldolase-type TIM barrel), IPR001155 (NADH:flavin oxidoreductase/NADH oxidase, N-terminal), IPR002343 (Paraneoplastic encephalomyelitis antigen)
41	him-14	ZK1127.11	n/a	chrII 7,067,448	him-14 encodes a germline-specific member of the MutS family of DNA mismatch repair (MMR) proteins that is orthologous to human MSH4 and Saccharomyces cerevisiae Msh4p; during the pachytene stage of meiosis, HIM-14 activity is required for promoting crossing over between homologous chromosomes and thus, for chiasmata formation and proper chromosome segregation; in contrast, HIM-14 activity does not appear to be required for mismatch repair, nor for chromosome pairing or synapsis; him-14 mRNA expression is detected exclusively in the germline.
42	K02E2.1	K02E2.1	n/a	chrV 20,348,590	contains similarity to Salmo salar NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3).; SW:NU2M_SALSA
43	T18D3.6	T18D3.6	n/a	chrX 12,450,290	contains similarity to Streptomyces coelicolor Chromosomal replication initiator protein dnaA.; SW:DNAA_STRCO
44	Y57G7A.6	Y57G7A.6	n/a	chrII 1,283,801	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
45	cyp-34A1	T10H4.10	n/a	chrV 15,286,741	C. elegans CYP-34A1 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV)
46	cyp-14A3	K09A11.4	n/a	chrX 13,272,959	C. elegans CYP-14A3 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
47	F48G7.4	F48G7.4	n/a	chrV 620,860
48	ZK721.3	ZK721.3	n/a	chrX 8,785,606
49	ZC376.6	ZC376.6	n/a	chrV 14,188,934	contains similarity to Interpro domain IPR001028 (Glycoprotein phospholipase D)
50	F56B3.8	F56B3.8	n/a	chrIV 774,932	contains similarity to Pfam domains PF00181 (Ribosomal Proteins L2, RNA binding domain) , PF03947 (Ribosomal Proteins L2, C-terminal domain) contains similarity to Interpro domains IPR002171 (Ribosomal protein L2), IPR008991 (Translation protein SH3-like), IPR016027 (Nucleic acid-binding, OB-fold-like), IPR012340 (Nucleic acid-binding, OB-fold), IPR014722 (Translation protein SH3-like, subgroup)