UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	E02A10.3	E02A10.3	9.999999999999999e-116	chrV 12,586,524	contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR011992 (EF-Hand type), IPR002048 (Calcium-binding EF-hand), IPR003299 (Flagellar calcium-binding protein (calflagin)), IPR000261 (EPS15 homology (EH))
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	flp-5	C03G5.7	n/a	chrX 8,529,581	flp-5 encodes a predicted FMRFamide-like peptide neurotransmitter that increases action potential frequency in the pharyngeal muscle when applied to the pharynx of dissected worms; expressed in the sensory neurons ASE and PVM.
4	F14D7.8	F14D7.8	n/a	chrV 14,312,353	contains similarity to Staphylococcus epidermidis Conserved hypothetical protein.; TR:Q8CSE5
5	Y43F8C.5	Y43F8C.5	n/a	chrV 19,631,978	contains similarity to Dictyostelium discoideum Myb-like protein (Fragment).; SW:MYBH_DICDI
6	str-261	W09D6.2	n/a	chrIII 11,075,857	C. elegans STR-261 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR011256 (Regulatory factor, effector, bacterial), IPR003002 (7TM chemoreceptor, subfamily 1)
7	C02H7.2	C02H7.2	n/a	chrX 734,085	contains similarity to Pfam domains PF00001 (7 transmembrane receptor (rhodopsin family)) , PF01748 (Caenorhabditis serpentine receptor-like protein) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32), IPR000276 (GPCR, rhodopsin-like)
8	F13H8.6	F13H8.6	n/a	chrII 6,285,852
9	C50B8.4	C50B8.4	n/a	chrV 13,572,712	contains similarity to Helicobacter pylori Vacuolating cytotoxin.; TR:Q9ZHV0
10	W03F11.4	W03F11.4	n/a	chrI 2,238,497	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000694 (Proline-rich region), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase), IPR003125 (Protein of unknown function WSN)
11	C17H12.10	C17H12.10	n/a	chrIV 6,808,208
12	F20D6.10	F20D6.10	n/a	chrV 8,193,961	contains similarity to Homo sapiens Protein FAM133A; ENSEMBL:ENSP00000318974
13	T02E9.1	T02E9.1	n/a	chrV 11,351,210	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000611 (Neuropeptide Y receptor), IPR000276 (GPCR, rhodopsin-like)
14	ZK353.4	ZK353.4	n/a	chrIII 8,388,992	contains similarity to Schizosaccharomyces pombe Uncharacterized serine/threonine-rich protein PB15E9.01c precursor.; SW:Q8TFG9
15	B0261.5	B0261.5	n/a	chrI 5,250,115
16	F46B3.14	F46B3.14	n/a	chrV 20,626,135	contains similarity to Interpro domain IPR003645 (Follistatin-like, N-terminal)
17	T21C9.11	T21C9.11	n/a	chrV 10,594,469	contains similarity to Homo sapiens Popeye domain containing protein 3; ENSEMBL:ENSP00000254765
18	C09G5.7	C09G5.7	n/a	chrII 10,715,547	contains similarity to Homo sapiens Putative uncharacterized protein (Fragment); ENSEMBL:ENSP00000333119
19	nlp-11	ZK1320.10	n/a	chrII 9,690,787	C. elegans NLP-11 protein ;
20	drn-1	C54A12.4	n/a	chrII 5,271,026	C. elegans DRN-1 protein; contains similarity to Pfam domain PF00071 Ras family contains similarity to Interpro domains IPR003577 (Ras small GTPase, Ras type), IPR003578 (Ras small GTPase, Rho type), IPR001806 (Ras GTPase), IPR003579 (Ras small GTPase, Rab type), IPR013753 (Ras)
21	F19G12.1	F19G12.1	n/a	chrX 1,431,242	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)
22	lgc-42	Y39A3B.2	n/a	chrIII 2,000,367	C. elegans LGC-42 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
23	F40E3.5	F40E3.5	n/a	chrI 2,646,674	contains similarity to Interpro domain IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
24	F10E7.9	F10E7.9	n/a	chrII 7,108,173	contains similarity to Pfam domain PF00324 Amino acid permease contains similarity to Interpro domain IPR004841 (Amino acid permease-associated region)
25	R09E10.2	R09E10.2	n/a	chrIV 10,317,896	contains similarity to Pfam domain PF00102 (Protein-tyrosine phosphatase)
26	C54G4.5	C54G4.5	n/a	chrI 7,996,207
27	C53D6.5	C53D6.5	n/a	chrIV 9,026,997	contains similarity to Enterococcus hirae V-type sodium pump subunit F (EC 3.6.3.14) (Na(+)-translocating ATPasessubunit F).; SW:P43437
28	W03B1.9	W03B1.9	n/a	chrIV 4,354,761	contains similarity to Interpro domain IPR000694 (Proline-rich region)
29	W03B1.8	W03B1.8	n/a	chrIV 4,344,287	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
30	lpr-2	T12A7.5	n/a	chrIV 11,783,102	C. elegans LPR-2 protein; contains similarity to Interpro domains IPR012674 (Calycin), IPR011038 (Calycin-like), IPR002345 (Lipocalin)
31	F58B4.4	F58B4.4	n/a	chrV 10,931,009	contains similarity to Plasmodium yoelii Rhoptry protein.; TR:Q26216
32	fipr-22	C37A5.2	n/a	chrI 14,155,893	C. elegans FIPR-22 protein ; contains similarity to Homo sapiens Keratin-associated protein 20-2; ENSEMBL:ENSP00000330746
33	C07A12.2	C07A12.2	n/a	chrX 4,545,119
34	zig-5	Y48A6A.1	n/a	chrIII 10,952,247	zig-5 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-5::gfp reporter fusion is expressed in a number of neurons, including PVT, VD1-13, RID, AFD, ASK, RIV, RIB, PVQ, DVA, and RIS; zig-5::gfp is detected in the PVT neuron beginning at the three-fold stage of embryogenesis and continuing throughout larval development; loss of zig-5 activity in large-scale RNAi screens has been reported to result in low levels of embryonic lethality.
35	cnc-7	F53H2.2	n/a	chrV 20,389,778	C. elegans CNC-7 protein ;
36	F15E11.11	F15E11.11	n/a	chrV 2,332,801	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
37	srh-61	T21B4.8	n/a	chrII 12,515,614	C. elegans SRH-61 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001360 (Glycoside hydrolase, family 1)
38	C47D2.1	C47D2.1	n/a	chrX 8,215,243
39	W03D8.1	W03D8.1	n/a	chrI 2,789,083	contains similarity to Cryptosporidium hominis Putative uncharacterized protein.; TR:Q5CFZ6
40	R13A1.5	R13A1.5	n/a	chrIV 7,191,489
41	tag-329	C50F4.3	n/a	chrV 9,535,638	C. elegans TAG-329 protein; contains similarity to Pfam domains PF08246 (Cathepsin propeptide inhibitor domain (I29)) , PF00112 (Papain family cysteine protease) contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR013201 (Proteinase inhibitor I29, cathepsin propeptide), IPR000668 (Peptidase C1A, papain C-terminal)
42	C01G10.4	C01G10.4	n/a	chrV 15,089,864	contains similarity to Staphylococcus aureus Staphylococcal secretory antigen ssaA2 precursor.; SW:Q5HDQ9
43	F21C10.9	F21C10.9	n/a	chrV 9,097,952	contains similarity to Interpro domains IPR000182 (GCN5-related N-acetyltransferase), IPR016181 (Acyl-CoA N-acyltransferase)
44	str-3	M7.13	n/a	chrIV 11,099,437	str-3 encodes a seven transmembrane chemosensory receptor; STR-3 is expressed in the ASI chemosensory neurons; STR-3 expression in ASI is repressed in the presence of dauer pheromone at concentrations lower than that which induces dauer formation.
45	R04F11.1	R04F11.1	n/a	chrV 12,309,572	R04F11.1 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; R04F11.1 is worm-specific, with obvious homologs only in C. elegans; R04F11.1 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
46	hen-1	C36B7.7	n/a	chrX 7,116,551	hen-1 encodes a secreted protein that contains a low-density lipoprotein (LDL) receptor motif A; HEN-1 activity is required for integration of sensory stimuli and behavioral plasticity; a hen-1::GFP reporter is expressed in pharyngeal muscles, the vulva, and weakly in a subset of neurons; antibodies to HEN-1 protein detect expression exclusively in the AIY and ASE neurons, where HEN-1 appears to localize to cell bodies and in a punctate pattern in nerve ring axons at sites of synapse formation; HEN-1 expression in AIY appears to be under the control of the TTX-3 LIM domain transcription factor.
47	K03F8.1	K03F8.1	n/a	chrIII 6,511,465	contains similarity to Interpro domains IPR015706 (RNA-directed DNA polymerase (reverse transcriptase), related), IPR003286 (Nematode reverse transcriptase-like)
48	K12B6.4	K12B6.4	n/a	chrV 6,280,741
49	F01D4.8	F01D4.8	n/a	chrIV 10,451,925	contains similarity to Pfam domain PF00291 Pyridoxal-phosphate dependent enzyme contains similarity to Interpro domain IPR001926 (Pyridoxal phosphate-dependent enzyme, beta subunit)
50	F39G3.4	F39G3.4	n/a	chrV 4,725,680	contains similarity to Pfam domain PF03188 Cytochrome b561 contains similarity to Interpro domains IPR004877 (Cytochrome b561), IPR006593 (Cytochrome b561 / ferric reductase transmembrane)