UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

genome assembly search

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C52A10.3	C52A10.3	0	chrV 5,238,510	contains similarity to Pfam domains PF07735 (F-box associated) , PF00646 (F-box domain) contains similarity to Interpro domains IPR001810 (Cyclin-like F-box), IPR012885 (F-box associated type 2)
2	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
3	C46H3.1	C46H3.1	n/a	chrX 1,210,043
4	F55G1.13	F55G1.13	n/a	chrIV 7,496,503	F55G1.13 encodes a protein that contains EGF-like repeats that are most closely related to those of Notch family members.
5	F48A9.1	F48A9.1	n/a	chrI 6,595,234
6	F34D10.4	F34D10.4	n/a	chrIII 3,737,977	contains similarity to Interpro domain IPR000694 (Proline-rich region)
7	his-43	F08G2.2	n/a	chrII 13,827,426	his-43 encodes an H2A histone.
8	gsp-1	F29F11.6	n/a	chrV 10,684,438	C. elegans GSP-1 protein; contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
9	F13H10.5	F13H10.5	n/a	chrIV 10,992,558	contains similarity to Pfam domain PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase contains similarity to Interpro domains IPR017849 (Alkaline phosphatase-like, alpha/beta/alpha), IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase), IPR017850 (Alkaline-phosphatase-like, core domain)
10	F33H2.5	F33H2.5	n/a	chrI 15,009,733	contains similarity to Pfam domains PF00136 (DNA polymerase family B) , PF03104 (DNA polymerase family B, exonuclease domain) , PF08490 (Domain of unknown function (DUF1744)) contains similarity to Interpro domains IPR006055 (Exonuclease), IPR006172 (DNA-directed DNA polymerase, family B), IPR006133 (DNA-directed DNA polymerase, family B, exonuclease), IPR006134 (DNA-directed DNA polymerase, family B, conserved region), IPR013697 (Region of unknown function DUF1744), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
11	F41A4.1	F41A4.1	n/a	chrIV 686,411	contains similarity to Pfam domain PF00024 PAN domain contains similarity to Interpro domains IPR000177 (Apple), IPR003609 (Apple-like), IPR003014 (N/apple PAN), IPR001507 (Endoglin/CD105 antigen)
12	F21H7.10	F21H7.10	n/a	chrV 16,255,295	contains similarity to Interpro domain IPR003066 (Salmonella invasion protein InvJ)
13	T16G12.6	T16G12.6	n/a	chrIII 10,072,699	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
14	F59E11.2	F59E11.2	n/a	chrV 9,002,297	contains similarity to Pfam domain PF00106 short chain dehydrogenase contains similarity to Interpro domains IPR002424 (Insect alcohol dehydrogenase family), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding)
15	F25G6.2	F25G6.2	n/a	chrV 8,576,005	contains similarity to Homo sapiens Isoform 1 of Symplekin; ENSEMBL:ENSP00000245934
16	smc-4	F35G12.8	n/a	chrIII 4,590,281	The smc-4 gene encodes a homolog of the SMC4 subunit of mitotic condensin; SMC-4 acts with MIX-1 to enable chromosome segregation.
17	C56C10.11	C56C10.11	n/a	chrII 6,599,683
18	F47G9.3	F47G9.3	n/a	chrV 11,315,117	contains similarity to Pfam domains PF00100 (Zona pellucida-like domain) , PF00024 (PAN domain) (2)contains similarity to Interpro domains IPR003609 (Apple-like), IPR003014 (N/apple PAN), IPR001507 (Endoglin/CD105 antigen)
19	tag-345	F55F8.5	n/a	chrI 5,656,990	C. elegans TAG-345 protein; contains similarity to Pfam domains PF08154 (NLE (NUC135) domain) , PF00400 (WD domain, G-beta repeat) (4)contains similarity to Interpro domains IPR012972 (NLE), IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
20	srm-2	T28H11.3	n/a	chrIV 5,009,723	C. elegans SRM-2 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
21	bbs-2	F20D12.3	n/a	chrIV 7,935,876	bbs-2 is orthologous to human BBS2 (OMIM:606151, mutated in Bardet-Biedl syndrome 2); while the function of BBS-2 is unknown, it shares conserved domains with its human paralogs BBS1 and BBS7, which also are mutated in other Bardet-Biedl syndromes.
22	C18B2.6	C18B2.6	n/a	chrX 3,615,375	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
23	K02B7.1	K02B7.1	n/a	chrII 14,689,509	contains similarity to Pfam domains PF00628 (PHD-finger) (2), PF00439 (Bromodomain) contains similarity to Interpro domains IPR001965 (Zinc finger, PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR001487 (Bromodomain), IPR013032 (EGF-like region, conserved site), IPR011011 (Zinc finger, FYVE/PHD-type)
24	K07E3.2	K07E3.2	n/a	chrX 8,105,875
25	T06E4.8	T06E4.8	n/a	chrV 9,622,529	contains similarity to Interpro domain IPR000694 (Proline-rich region)
26	D2013.6	D2013.6	n/a	chrII 9,330,348	contains similarity to Pfam domain PF02893 GRAM domain contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR004182 (GRAM)
27	del-3	F26A3.6	n/a	chrI 7,671,514	C. elegans DEL-3 protein ;
28	F38E1.9	F38E1.9	n/a	chrV 8,358,662	contains similarity to Pfam domain PF04193 PQ loop repeat contains similarity to Interpro domains IPR006603 (Cystinosin/ERS1p repeat), IPR016817 (Mannose-P-dolichol utilization defect 1 protein)
29	B0205.8	B0205.8	n/a	chrI 10,729,585	contains similarity to Homo sapiens hypothetical protein LOC25940; ENSEMBL:ENSP00000238823
30	T24A6.17	T24A6.17	n/a	chrV 3,564,846
31	srx-105	F40H7.8	n/a	chrII 3,700,613	C. elegans SRX-105 protein ;
32	D2005.3	D2005.3	n/a	chrI 7,814,395	contains similarity to Pfam domain PF01984 Double-stranded DNA-binding domain contains similarity to Interpro domain IPR002836 (DNA-binding TFAR19-related protein)
33	C01A2.5	C01A2.5	n/a	chrI 13,385,906	contains similarity to Pfam domain PF04641 Protein of unknown function, DUF602 contains similarity to Interpro domain IPR006735 (Protein of unknown function DUF602)
34	C26E1.3	C26E1.3	n/a	chrV 13,303,181	contains similarity to Interpro domains IPR001356 (Homeobox), IPR009057 (Homeodomain-like)
35	C49C3.5	C49C3.5	n/a	chrIV 17,329,906	contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR012287 (Homeodomain-related), IPR001356 (Homeobox), IPR009057 (Homeodomain-like)
36	K09F6.8	K09F6.8	n/a	chrII 2,295,399
37	C15B12.1	C15B12.1	n/a	chrX 6,477,878	contains similarity to Pfam domain PF01266 FAD dependent oxidoreductase contains similarity to Interpro domains IPR006076 (FAD dependent oxidoreductase), IPR000447 (FAD-dependent glycerol-3-phosphate dehydrogenase), IPR016040 (NAD(P)-binding)
38	cyn-11	T01B7.4	n/a	chrII 8,715,669	cyn-11 encodes a divergent cyclophilin D isoform, with alterations in the normally well-conserved cyclophilin-binding domain, and a central 7-8 residue insert not usually found in cyclophilins, except from plants; CYN-11 has sluggish but detectable peptidyl-prolyl isomerase activity in vitro, suggesting that it has a specialized substrate in vivo; CYN-11 is dispensable for viability and gross morphology in mass RNAi screens.
39	F55A3.6	F55A3.6	n/a	chrI 10,784,384	contains similarity to Pfam domain PF00334 Nucleoside diphosphate kinase contains similarity to Interpro domain IPR001564 (Nucleoside diphosphate kinase, core)
40	M195.2	M195.2	n/a	chrII 8,362,076	contains similarity to Pfam domain PF02363 Cysteine rich repeat
41	srg-10	T04A8.1	n/a	chrIII 4,678,679	C. elegans SRG-10 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
42	C42D4.2	C42D4.2	n/a	chrIV 7,181,781	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domain IPR002018 (Carboxylesterase, type B)
43	prx-11	C47B2.8	n/a	chrI 12,971,925	C. elegans PRX-11 protein ; contains similarity to Homo sapiens Isoform 1 of Peroxisomal membrane protein 11C; ENSEMBL:ENSP00000221480
44	ned-8	F45H11.2	n/a	chrI 10,373,604	The ned-8 gene encodes a ubiquitin-like protein that is required for both embryogenesis and terminal hypodermal differentiation.
45	sri-27	ZK697.4	n/a	chrV 1,726,643	C. elegans SRI-27 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
46	F07A5.3	F07A5.3	n/a	chrI 7,355,830	contains similarity to Pfam domain PF01130 CD36 family contains similarity to Interpro domain IPR002159 (CD36 antigen)
47	dmd-5	F10C1.5	n/a	chrII 5,773,110	C. elegans DMD-5 protein; contains similarity to Pfam domain PF00751 DM DNA binding domain contains similarity to Interpro domain IPR001275 (DM DNA-binding)
48	F39E9.7	F39E9.7	n/a	chrII 3,306,570	contains similarity to Pfam domain PF00035 Double-stranded RNA binding motif contains similarity to Interpro domains IPR001159 (Double-stranded RNA binding), IPR014720 (Double-stranded RNA-binding-like)
49	M116.2	M116.2	n/a	chrIV 8,399,310	contains similarity to Pfam domain PF01501 Glycosyl transferase family 8 contains similarity to Interpro domain IPR002495 (Glycosyl transferase, family 8)
50	clec-66	F35C5.9	n/a	chrII 12,905,422	C. elegans CLEC-66 protein; contains similarity to Pfam domains PF00092 (von Willebrand factor type A domain) , PF00059 (Lectin C-type domain) contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002035 (von Willebrand factor, type A)