UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C50H2.7	C50H2.7	3e-79	chrV 9,923,573	contains similarity to Interpro domain IPR011009 (Protein kinase-like)
2	srj-8	T28A11.9	n/a	chrV 3,248,476	C. elegans SRJ-8 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
3	F14D7.1	F14D7.1	n/a	chrV 14,289,203	contains similarity to Pfam domain PF06887 Protein of unknown function (DUF1265) contains similarity to Interpro domain IPR009676 (Protein of unknown function DUF1265)
4	srh-61	T21B4.8	n/a	chrII 12,515,614	C. elegans SRH-61 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001360 (Glycoside hydrolase, family 1)
5	Y54E5A.3	Y54E5A.3	n/a	chrI 14,698,399	contains similarity to Escherichia coli Orf732.; TR:Q46767
6	K06A4.6	K06A4.6	n/a	chrV 9,480,821	contains similarity to Saccharomyces cerevisiae Synaptojanin-like protein; SGD:YOR109W
7	F39G3.4	F39G3.4	n/a	chrV 4,725,680	contains similarity to Pfam domain PF03188 Cytochrome b561 contains similarity to Interpro domains IPR004877 (Cytochrome b561), IPR006593 (Cytochrome b561 / ferric reductase transmembrane)
8	Y62H9A.8	Y62H9A.8	n/a	chrX 11,891,763	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IEC0
9	T28D9.9	T28D9.9	n/a	chrII 6,484,502
10	F36G9.15	F36G9.15	n/a	chrV 15,987,734	contains similarity to Pfam domain PF06678 Protein of unknown function (DUF1179) contains similarity to Interpro domain IPR009564 (Protein of unknown function DUF1179)
11	Y62H9A.13	Y62H9A.13	n/a	chrX 11,918,504	contains similarity to Homo sapiens Hu-Claspin; ENSEMBL:ENSP00000251195
12	F25H5.2	F25H5.2	n/a	chrI 9,180,480
13	H32C10.1	H32C10.1	n/a	chrIV 5,935,928	contains similarity to Interpro domains IPR006353 (HAD-superfamily hydrolase, subfamily IIA, CECR5), IPR006357 (HAD-superfamily hydrolase, subfamily IIA)
14	R02F2.6	R02F2.6	n/a	chrIII 5,478,761
15	T19D2.3	T19D2.3	n/a	chrX 3,939,726
16	str-162	E03H12.1	n/a	chrIV 4,993,123	C. elegans STR-162 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
17	F59A3.8	F59A3.8	n/a	chrI 5,523,890	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
18	T15H9.5	T15H9.5	n/a	chrII 9,610,953	contains similarity to Dictyostelium discoideum Putative uncharacterized protein.; TR:Q55FI4
19	C31G12.4	C31G12.4	n/a	chrV 18,177,707	contains similarity to Pfam domain PF00646 (F-box domain)
20	C08E8.3	C08E8.3	n/a	chrV 18,351,418	contains similarity to Clostridium perfringens Probable Ser-type protease.; TR:Q8XHC4
21	K01D12.15	K01D12.15	n/a	chrV 12,386,487	contains similarity to Interpro domains IPR001859 (Ribosomal protein P2), IPR000976 (Wilm's tumour protein)
22	F46A9.2	F46A9.2	n/a	chrI 9,459,902	contains similarity to Saccharomyces cerevisiae part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); similar to microtubule binding proteins and to X90565_5.cds; SGD:YLR197W
23	Y70G10A.2	Y70G10A.2	n/a	chrIII 10,229,611	contains similarity to Pfam domains PF00008 (EGF-like domain) , PF07974 (EGF-like domain) contains similarity to Interpro domains IPR000742 (EGF-like, type 3), IPR006209 (EGF-like), IPR006210 (EGF), IPR013032 (EGF-like region, conserved site), IPR013111 (EGF, extracellular)
24	ZK354.9	ZK354.9	n/a	chrIV 5,307,602	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
25	F17E9.3	F17E9.3	n/a	chrIV 8,355,135
26	F21F8.5	F21F8.5	n/a	chrV 8,265,454
27	F46F5.1	F46F5.1	n/a	chrII 790,983
28	K09C6.7	K09C6.7	n/a	chrV 837,078	contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
29	ZC239.14	ZC239.14	n/a	chrII 3,221,697	contains similarity to Pfam domain PF02214 K+ channel tetramerisation domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation)
30	numr-1	F08F8.5	n/a	chrIII 7,362,966	C. elegans NUMR-1 protein ;
31	H04M03.11	H04M03.11	n/a	chrIV 5,883,356
32	Y51A2B.4	Y51A2B.4	n/a	chrV 18,387,652	contains similarity to Pfam domain PF01764 Lipase (class 3) contains similarity to Interpro domains IPR002921 (Lipase, class 3), IPR008262 (Lipase, active site)
33	M28.9	M28.9	n/a	chrII 10,641,581	contains similarity to Homo sapiens hypothetical protein; VG:OTTHUMP00000024599
34	C25G4.7	C25G4.7	n/a	chrIV 12,457,730	contains similarity to Pfam domain PF06887 Protein of unknown function (DUF1265) contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR009676 (Protein of unknown function DUF1265)
35	sri-37	D2062.2	n/a	chrII 2,630,401	C. elegans SRI-37 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
36	F56H6.6	F56H6.6	n/a	chrI 12,295,311	contains similarity to Mus musculus N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferases(EC 2.4.1.149) (Poly-N-acetyllactosamine extension enzyme) (I-beta-s1,3-N-acetylglucosaminyltransferase) (iGnT) (UDP-GlcNAc:betaGal beta-s1,3-N-acetylglucosaminyltransferase 1).; SW:Q8BWP8
37	clec-124	C17F4.1	n/a	chrII 3,250,580	C. elegans CLEC-124 protein; contains similarity to Interpro domain IPR016187 (C-type lectin fold)
38	F41D3.7	F41D3.7	n/a	chrI 12,267,272	contains similarity to Autographa californica nuclear polyhedrosis virus ORF 5 (Fragment).; TR:O71053
39	F40E3.5	F40E3.5	n/a	chrI 2,646,674	contains similarity to Interpro domain IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
40	klp-17	W02B12.7	n/a	chrII 11,466,706	klp-17 encodes a C-terminal kinesin motor protein orthologous to Drosophila NCD and Saccharomyces cerevisiae KAR3; by homology, KLP-17 is predicted to function as a minus-end directed motor; loss of klp-17 activity via RNAi results in embryonic lethality generally at the one- or two-cell stage with disorganized mitotic spindles and polyploid nuclei, suggesting that KLP-17 plays a role in chromosome segregation and germline development; in situ hybridization studies reveal that klp-17 mRNA is localized specifically to cell nuclei during early development, from the one-cell stage of embryogenesis until early larval stages; a klp-17::gfp transgene did not yield detectable GFP expression, but did result in a small percentage of morphologically abnormal males and intersexual animals that grew slowly and died upon reaching maturity, consistent with a role for klp-17 in chromosome dynamics.
41	clec-99	ZK39.8	n/a	chrI 11,157,780	C. elegans CLEC-99 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
42	hlh-13	F48D6.3	n/a	chrX 4,250,020	C. elegans HLH-13 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domains IPR001092 (Basic helix-loop-helix dimerisation region bHLH), IPR011598 (Helix-loop-helix DNA-binding), IPR002418 (Transcription regulator Myc)
43	ferl-1	T05E8.1	n/a	chrI 5,457,629	C. elegans FERL-1 protein; contains similarity to Pfam domains PF00168 (C2 domain) , PF08165 (FerA (NUC095) domain) , PF08150 (FerB (NUC096) domain) contains similarity to Interpro domains IPR012561 (FerB), IPR006614 (Dysferlin, C-terminal), IPR008973 (C2 calcium/lipid-binding region, CaLB), IPR012560 (FerA), IPR006613 (Dysferlin, N-terminal), IPR000008 (C2 calcium-dependent membrane targeting)
44	W03D8.2	W03D8.2	n/a	chrI 2,799,577	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
45	ani-1	Y49E10.19	n/a	chrIII 12,449,658	ani-1 encodes one of three C. elegans anillins; ANI-1 activity is required in the early embryo for cortical contractile events, including polar body extrusion, membrane ruffling, and pseudocleavage; at later stages of development, ANI-1 also plays a role in cuticle formation, coordinated locomotion, vulval development, and male tail formation; in regulating cortical events, ANI-1 appears to function by positively regulating septin (UNC-59 and UNC-61) localization to the contractile ring as well as formation of septin- and NMY-2-containing cortical patches; in telophase embryos, ANI-1 localizes to the cell cortex and cleavage furrow.
46	K06B4.4	K06B4.4	n/a	chrV 15,669,604	contains similarity to Interpro domain IPR006025 (Neutral zinc metallopeptidases, zinc-binding region)
47	ZK697.3	ZK697.3	n/a	chrV 1,729,883	contains similarity to Interpro domain IPR001411 (Tetracycline resistance protein, TetB)
48	T21E3.2	T21E3.2	n/a	chrI 3,931,189	contains similarity to Homo sapiens 55 kDa protein; ENSEMBL:ENSP00000273725
49	ins-39	F21E9.4	n/a	chrX 1,344,119	ins-39 encodes an insulin-like peptide.
50	W07G4.2	W07G4.2	n/a	chrV 13,035,710	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domains IPR006583 (CW), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)