UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	clx-1	C50F7.2	0.0000002	chrIV 7,735,511	clx-1 encodes a protein that contains 23 copies of a 15 amino acid repeat, possibly derived from a collagen triplet; there is no transcript evidence for this locus.
2	F55A4.4	F55A4.4	n/a	chrX 1,025,409	contains similarity to Pfam domain PF00035 Double-stranded RNA binding motif contains similarity to Interpro domains IPR001159 (Double-stranded RNA binding), IPR014720 (Double-stranded RNA-binding-like)
3	F16H6.4	F16H6.4	n/a	chrV 18,199,789	contains similarity to Pfam domain PF06162 Caenorhabditis elegans protein of unknown function (DUF976) contains similarity to Interpro domains IPR010381 (Protein of unknown function DUF976, Caenorhabditis species), IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)
4	C25F6.1	C25F6.1	n/a	chrX 5,487,263
5	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
6	srh-186	F36G9.2	n/a	chrV 15,956,387	C. elegans SRH-186 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
7	his-30	F35H10.1	n/a	chrIV 8,331,839	his-30 encodes an H2A histone; by homology, HIS-30 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-30 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV.
8	F58F6.6	F58F6.6	n/a	chrIV 1,342,037	contains similarity to Pfam domain PF04789 Protein of unknown function (DUF621) contains similarity to Interpro domain IPR006874 (Protein of unknown function DUF621)
9	pqn-39	F48F7.4	n/a	chrX 13,967,574	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
10	C08F11.7	C08F11.7	n/a	chrIV 13,637,874	contains similarity to Pfam domain PF04435 Domain of unknown function (DUF545) contains similarity to Interpro domains IPR006570 (SPK), IPR002398 (Peptidase C14, caspase precursor p45)
11	fbxa-102	K03D7.7	n/a	chrV 17,492,710	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
12	rnp-7	K04G7.10	n/a	chrIII 7,160,025	C. elegans RNP-7 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR012677 (Nucleotide-binding, alpha-beta plait), IPR000504 (RNA recognition motif, RNP-1)
13	K08B5.1	K08B5.1	n/a	chrX 16,560,293
14	F52C9.3	F52C9.3	n/a	chrIII 5,324,039	contains similarity to Pfam domain PF00781 Diacylglycerol kinase catalytic domain (presumed) contains similarity to Interpro domain IPR001206 (Diacylglycerol kinase, catalytic region)
15	pqn-15	C24A8.3	n/a	chrX 4,307,497	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
16	T15B7.13	T15B7.13	n/a	chrV 6,827,999	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
17	C09F9.2	C09F9.2	n/a	chrII 14,708,961	contains similarity to Pfam domains PF01390 (SEA domain) , PF01826 (Trypsin Inhibitor like cysteine rich domain) (3), PF07974 (EGF-like domain) , PF03351 (DOMON domain) (4)contains similarity to Interpro domains IPR000742 (EGF-like, type 3), IPR006210 (EGF), IPR005018 (DOMON related), IPR002919 (Protease inhibitor I8, cysteine-rich trypsin inhibitor-like), IPR000082 (SEA), IPR008960 (Carbohydrate-binding family 9/cellobiose dehydrogenase, cytochrome), IPR013032 (EGF-like region, conserved site), IPR013111 (EGF, extracellular), IPR013050 (DOMON)
18	F39D8.3	F39D8.3	n/a	chrX 15,423,577	contains similarity to Homo sapiens Sperm-specific thioredoxin; ENSEMBL:ENSP00000304908
19	T01D1.3	T01D1.3	n/a	chrII 175,055
20	his-57	F54E12.5	n/a	chrIV 11,340,574	his-57 encodes an H2A histone.
21	nspb-12	F09F7.8	n/a	chrIII 5,568,450	C. elegans NSPB-12 protein ;
22	C26D10.4	C26D10.4	n/a	chrII 8,331,544	contains similarity to Pfam domains PF08544 (GHMP kinases C terminal) , PF00288 (GHMP kinases N terminal domain) contains similarity to Interpro domains IPR006206 (Mevalonate and galactokinase), IPR001174 (Galactokinase/homoserine kinase), IPR006204 (GHMP kinase), IPR014721 (Ribosomal protein S5 domain 2-type fold), IPR013750 (GHMP kinase, C-terminal)
23	srx-35	T01C4.5	n/a	chrV 7,121,587	C. elegans SRX-35 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32), IPR000276 (GPCR, rhodopsin-like)
24	F56A8.1	F56A8.1	n/a	chrIII 13,252,041	contains similarity to Pfam domain PF04547 Protein of unknown function, DUF590 contains similarity to Interpro domain IPR007632 (Protein of unknown function DUF590)
25	T21C9.9	T21C9.9	n/a	chrV 10,591,537	contains similarity to Interpro domain IPR000694 (Proline-rich region)
26	T07H6.5	T07H6.5	n/a	chrX 6,288,966	contains similarity to Pfam domain PF00084 Sushi domain (SCR repeat) contains similarity to Interpro domains IPR000436 (Sushi/SCR/CCP), IPR016060 (Complement control module)
27	K09F6.8	K09F6.8	n/a	chrII 2,295,399
28	ZK1320.9	ZK1320.9	n/a	chrII 9,685,397	contains similarity to Pfam domain PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain contains similarity to Interpro domains IPR003702 (Acetyl-CoA hydrolase/transferase), IPR001220 (Legume lectin, beta domain)
29	F41G3.3	F41G3.3	n/a	chrII 6,757,638
30	srh-277	K05D4.6	n/a	chrV 16,186,134	C. elegans SRH-277 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001280 (Photosystem I psaA and psaB)
31	hil-8	T05E8.2	n/a	chrI 5,467,787	C. elegans HIL-8 protein; contains similarity to Interpro domain IPR005818 (Histone H1/H5)
32	F42G8.7	F42G8.7	n/a	chrIV 8,127,262	contains similarity to Pfam domain PF00085 Thioredoxin contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR013766 (Thioredoxin domain)
33	T10D4.1	T10D4.1	n/a	chrII 3,151,352	contains similarity to Pfam domains PF01579 (Domain of unknown function DUF19) , PF02343 (Domain of unknown function DUF130) contains similarity to Interpro domains IPR003326 (Protein of unknown function DUF130), IPR002542 (Protein of unknown function DUF19)
34	R102.6	R102.6	n/a	chrIV 10,699,884	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR000976 (Wilm's tumour protein)
35	ugt-25	C10H11.3	n/a	chrI 4,733,442	C. elegans UGT-25 protein; contains similarity to Pfam domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
36	F14H8.5	F14H8.5	n/a	chrV 15,021,516	contains similarity to Bacillus cereus Hypothetical membrane spanning protein.; TR:Q812W2
37	T28F2.2	T28F2.2	n/a	chrI 3,638,075	contains similarity to Homo sapiens Isoform 2 of COMM domain-containing protein 4; ENSEMBL:ENSP00000340867
38	K02G10.5	K02G10.5	n/a	chrX 4,689,524	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF03137 (Organic Anion Transporter Polypeptide (OATP) family) contains similarity to Interpro domains IPR004156 (Organic anion transporter polypeptide OATP), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
39	srz-42	H12I19.1	n/a	chrIV 14,130,194	C. elegans SRZ-42 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
40	fbxb-85	R17.1	n/a	chrIII 10,848,088	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
41	C15H9.3	C15H9.3	n/a	chrX 6,116,887	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like)
42	K08D10.5	K08D10.5	n/a	chrIV 4,168,957	contains similarity to Rhodopirellula baltica DNA-binding protein SMUBP-2.; TR:Q7UWP1
43	bcc-1	M7.3	n/a	chrIV 11,089,293	bcc-1 encodes a homolog of Drosophila and vertebrate Bicaudal C (BICC) that contains KH RNA-binding domains, a serine-rich region, and a SAM (sterile alpha motif) domain; by homology, BCC-1 is predicted to function as a cytoplasmic RNA-binding protein that is required for translational regulation and/or mRNA stability during embryonic or germline development; however, as loss of bcc-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of BCC-1 in C. elegans development and/or behavior is not yet known.
44	Y54G11A.9	Y54G11A.9	n/a	chrII 14,345,333	contains similarity to Pfam domain PF01521 Iron-sulphur cluster biosynthesis contains similarity to Interpro domains IPR016092 (HesB/YadR/YfhF), IPR000361 (HesB/YadR/YfhF-like)
45	E02H9.1	E02H9.1	n/a	chrIII 2,468,952
46	srg-10	T04A8.1	n/a	chrIII 4,678,679	C. elegans SRG-10 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
47	K06H7.2	K06H7.2	n/a	chrIII 8,094,871	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
48	C42C1.6	C42C1.6	n/a	chrIV 12,294,581	contains similarity to Drosophila melanogaster Flybase gene name is CG16970-PA; FLYBASE:CG16970-PA
49	C33A12.1	C33A12.1	n/a	chrIV 9,524,313	C33A12.1 encodes the C. elegans ortholog of the NDUFA5/B13 subunit of the mitochondrial NADH dehydrogenase (ubiquinone) complex (complex I).
50	C18B2.6	C18B2.6	n/a	chrX 3,615,375	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)