UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C50E3.12	C50E3.12	0	chrV 7,621,252	contains similarity to Homo sapiens retinitis pigmentosa 1-like 1; ENSEMBL:ENSP00000371923
2	sra-25	T26E3.9	n/a	chrI 12,687,150	C. elegans SRA-25 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR000344 (Nematode chemoreceptor, Sra)
3	srh-201	R03H4.9	n/a	chrV 9,013,008	C. elegans SRH-201 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
4	B0207.8	B0207.8	n/a	chrI 5,951,441
5	srg-4	T12A2.12	n/a	chrIII 6,261,094	C. elegans SRG-4 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
6	fbxa-104	T06E6.13	n/a	chrV 15,422,084	C. elegans FBXA-104 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
7	C33F10.2	C33F10.2	n/a	chrII 4,830,501	contains similarity to Pfam domains PF00069 (Protein kinase domain) , PF00566 (TBC domain) contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR002290 (Serine/threonine protein kinase), IPR000195 (RabGAP/TBC), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
8	T08A9.4	T08A9.4	n/a	chrX 7,313,654	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
9	rba-1	K07A1.11	n/a	chrI 9,617,307	C. elegans RBA-1 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
10	C38D4.9	C38D4.9	n/a	chrIII 4,803,842	contains similarity to Pfam domains PF01170 (Putative RNA methylase family UPF0020) , PF05175 (Methyltransferase small domain) , PF08242 (Methyltransferase domain) contains similarity to Interpro domains IPR007848 (Methyltransferase small), IPR000241 (Putative RNA methylase), IPR002296 (N6 adenine-specific DNA methyltransferase, N12 class), IPR013217 (Methyltransferase type 12), IPR002052 (N-6 adenine-specific DNA methylase, conserved site), IPR002723 (Protein of unknown function DUF43)
11	Y55H10A.2	Y55H10A.2	n/a	chrIV 3,364,812	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
12	ZC53.1	ZC53.1	n/a	chrX 1,912,323
13	F07H5.7	F07H5.7	n/a	chrII 8,793,642
14	F55A3.5	F55A3.5	n/a	chrI 10,782,421	contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR000889 (Glutathione peroxidase)
15	clec-246	F16H6.2	n/a	chrV 18,190,268	C. elegans CLEC-246 protein ;
16	srj-8	T28A11.9	n/a	chrV 3,248,476	C. elegans SRJ-8 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
17	F55G7.3	F55G7.3	n/a	chrX 11,941,116	contains similarity to Saccharomyces cerevisiae appears to control expression of spliceosome components PRP4 and PRP3; SGD:YDR464W
18	srh-215	T20B3.3	n/a	chrV 16,831,260	C. elegans SRH-215 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001356 (Homeobox)
19	F02H6.4	F02H6.4	n/a	chrIV 14,217,678	contains similarity to Saccharomyces cerevisiae GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2; SGD:YAL035W
20	sra-33	B0304.6	n/a	chrII 4,535,979	C. elegans SRA-33 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
21	R08H2.10	R08H2.10	n/a	chrV 15,373,870	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
22	ZK1248.13	ZK1248.13	n/a	chrII 5,830,927
23	str-116	F07B10.2	n/a	chrV 11,267,629	C. elegans STR-116 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
24	Y75B8A.14	Y75B8A.14	n/a	chrIII 12,217,589	contains similarity to Pfam domain PF03029 Conserved hypothetical ATP binding protein contains similarity to Interpro domain IPR004130 (Protein of unknown function, ATP binding)
25	F19F10.5	F19F10.5	n/a	chrV 7,558,466	contains similarity to Pfam domain PF00178 Ets-domain contains similarity to Interpro domains IPR000418 (Ets), IPR011991 (Winged helix repressor DNA-binding)
26	tsp-12	T14G10.6	n/a	chrIV 10,149,846	C. elegans TSP-12 protein; contains similarity to Pfam domain PF00335 Tetraspanin family contains similarity to Interpro domains IPR000301 (CD9/CD37/CD63 antigen), IPR008952 (Tetraspanin)
27	F16H6.8	F16H6.8	n/a	chrV 18,214,941	contains similarity to Mycoplasma capricolum CLPA/CLPB family (Fragment).; TR:Q49064
28	H03E18.2	H03E18.2	n/a	chrX 8,514,766
29	F07G6.3	F07G6.3	n/a	chrX 1,723,986
30	mdt-10	T09A5.6	n/a	chrII 7,854,378	C. elegans MDT-10 protein ; contains similarity to Homo sapiens Mediator of RNA polymerase II transcription subunit 10; ENSEMBL:ENSP00000255764
31	fbxb-117	F55C9.1	n/a	chrV 19,283,568	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
32	C07A9.12	C07A9.12	n/a	chrIII 9,726,313	contains similarity to Pfam domain PF01705 CX module contains similarity to Interpro domain IPR002619 (Protein of unknown function CX)
33	W03F9.1	W03F9.1	n/a	chrV 125,395	contains similarity to Pfam domain PF03367 ZPR1 zinc-finger domain contains similarity to Interpro domain IPR004457 (Zinc finger, ZPR1-type)
34	dsl-4	F16B12.2	n/a	chrX 14,091,441	dsl-4 encodes a putative secreted protein with a single DSL domain and three EGF domains in series, somewhat like Delta/LAG-2; unlike the nematode-specific family of Delta/LAG-2-like proteins (including DSL-1, -2, -3, -5, -6, and -7), DSL-4 is evolutionarily divergent, with perhaps a distant affinity to APX-1, ARG-1, and LAG-2.
35	H03G16.2	H03G16.2	n/a	chrX 15,068,357	contains similarity to Interpro domain IPR000998 (MAM)
36	str-200	F20E11.4	n/a	chrV 17,457,362	C. elegans STR-200 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
37	T22C1.5	T22C1.5	n/a	chrI 7,941,375	contains similarity to Saccharomyces cerevisiae Iswi One Complex; SGD:YMR044W
38	twk-10	K04A8.4	n/a	chrV 6,553,200	C. elegans TWK-10 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2)
39	srh-23	C02E7.5	n/a	chrV 4,921,905	C. elegans SRH-23 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
40	ZK1127.3	ZK1127.3	n/a	chrII 7,055,637	contains similarity to Pfam domain PF07904 CT20 family contains similarity to Interpro domain IPR012423 (CT20)
41	fbxb-21	ZC204.8	n/a	chrII 1,648,389	fbxb-21 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXB-21 also contains a C-terminal type 2 F-box-associated domain of presently unknown function.
42	T02B11.6	T02B11.6	n/a	chrV 887,079	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
43	C29F9.2	C29F9.2	n/a	chrIII 131,349	contains similarity to Homo sapiens Isoform 3 of MAP7 domain-containing protein 1; ENSEMBL:ENSP00000362241
44	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
45	twk-44	Y71H9A.1	n/a	chrX 11,625,639	C. elegans TWK-44 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR011001 (Saposin-like), IPR008139 (Saposin B), IPR013099 (Ion transport 2)
46	W03F8.3	W03F8.3	n/a	chrIV 5,187,201	contains similarity to Pfam domains PF00472 (Peptidyl-tRNA hydrolase domain) , PF03462 (PCRF domain) contains similarity to Interpro domains IPR005139 (PCRF), IPR000352 (Class I peptide chain release factor)
47	acr-5	K03F8.2	n/a	chrIII 6,512,172	acr-5 encodes a predicted member of the alpha subunit family of nicotinic acetylcholine receptors that is expressed in the nervous system.
48	F21E9.2	F21E9.2	n/a	chrX 1,329,400
49	F49C12.3	F49C12.3	n/a	chrIV 9,301,257	contains similarity to Pfam domain PF03407 Protein of unknown function (DUF271) contains similarity to Interpro domain IPR005069 (Protein of unknown function DUF271)
50	glb-20	R01E6.6	n/a	chrX 13,554,276	glb-20 encodes a globin; glb-20 transcription is higher in L3 and dauers than in young adults; glb-20 has no obvious function in mass RNAi assays.