UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C44B7.5	C44B7.5	2e-119	chrII 6,871,922	contains similarity to Interpro domain IPR005018 (DOMON related)
2	F48E3.4	F48E3.4	n/a	chrX 7,494,618	contains similarity to Interpro domains IPR001314 (Peptidase S1A, chymotrypsin), IPR001254 (Peptidase S1 and S6, chymotrypsin/Hap), IPR009003 (Peptidase, trypsin-like serine and cysteine)
3	ZK813.2	ZK813.2	n/a	chrX 3,444,031
4	K07A1.6	K07A1.6	n/a	chrI 9,592,533	K07A1.6 encodes a putative secreted TIL-domain protease inhibitor paralogous to SWM-1, ISL-1, and the products of 11 other C. elegans genes; K07A1.6 and its relatives are collectively similar to other TIL-domain protease inhibitors from nematodes, insects, and vertebrates; K07A1.6 has no obvious function in mass RNAi assays.
5	Y45F10C.2	Y45F10C.2	n/a	chrIV 13,662,361	contains similarity to Pfam domain PF07403 Protein of unknown function (DUF1505) contains similarity to Interpro domain IPR009981 (Protein of unknown function DUF1505)
6	vit-5	C04F6.1	n/a	chrX 3,406,006	vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent; by homology, VIT-5 is predicted to function as a lipid transport protein; loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth; VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes.
7	C35B1.4	C35B1.4	n/a	chrIV 4,079,997
8	F55B11.2	F55B11.2	n/a	chrIV 14,422,746	contains similarity to Xenopus laevis Similar to LGN protein.; TR:Q8AVU7
9	C08F11.12	C08F11.12	n/a	chrIV 13,651,230	contains similarity to Pfam domain PF07403 Protein of unknown function (DUF1505) contains similarity to Interpro domain IPR009981 (Protein of unknown function DUF1505)
10	cpg-3	R06C7.4	n/a	chrI 7,245,503	cgp-3 encodes a putatively secreted protein with an N-terminal low-complexity domain containing 15 potential chondroitin attachment sites, and a C-terminal EGF-like region; cpg-3 mRNA is enriched in oogenesis, but CPG-3 has no obvious function in mass RNAi assays.
11	vit-1	K09F5.2	n/a	chrX 7,730,476	C. elegans VIT-1 protein; contains similarity to Pfam domains PF00094 (von Willebrand factor type D domain) , PF09172 (Domain of unknown function (DUF1943)) , PF01347 (Lipoprotein amino terminal region) contains similarity to Interpro domains IPR015819 (Lipid transport protein, beta-sheet shell), IPR011030 (Vitellinogen, superhelical), IPR015818 (Vitellinogen, open beta-sheet, subdomain 2), IPR001747 (Lipid transport protein, N-terminal), IPR015816 (Vitellinogen, beta-sheet N-terminal), IPR001846 (von Willebrand factor, type D), IPR015255 (Vitellinogen, open beta-sheet)
12	ZC395.5	ZC395.5	n/a	chrIII 5,268,152
13	W02D9.6	W02D9.6	n/a	chrI 12,560,492	contains similarity to Homo sapiens similar to KIAA1107 protein; ENSEMBL:ENSP00000176186
14	ZK813.3	ZK813.3	n/a	chrX 3,442,136	contains similarity to Homo sapiens G patch domain containing 8; ENSEMBL:ENSP00000335486
15	C10G8.4	C10G8.4	n/a	chrV 5,312,109	C10G8.4 encodes a putative secreted TIL-domain protease inhibitor paralogous to SWM-1, ISL-1, and the products of 11 other C. elegans genes; C10G8.4 and its relatives are collectively similar to other TIL-domain protease inhibitors from nematodes, insects, and vertebrates; C10G8.4 has no obvious function in mass RNAi assays.
16	oma-2	ZC513.6	n/a	chrV 8,030,304	The oma-2 gene encodes a zinc finger protein of the TIS11 finger type that is paralogous to OMA-1; while either oma-1 or oma-2 individually have no obvious mutant phenotype, a normal copy of at least one of these genes is required for oocyte maturation.
17	col-2	W01B6.7	n/a	chrIV 10,084,918	col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals.
18	F46F5.14	F46F5.14	n/a	chrII 800,774	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
19	C49F5.7	C49F5.7	n/a	chrX 11,995,234	contains similarity to Homo sapiens Similar to PDZ domain proteins; ENSEMBL:ENSP00000298474
20	Y62H9A.5	Y62H9A.5	n/a	chrX 11,882,452	contains similarity to Oceanobacillus iheyensis Hypothetical protein.; TR:Q8ERS5
21	F53H4.2	F53H4.2	n/a	chrX 15,857,486	contains similarity to Interpro domains IPR001220 (Legume lectin, beta domain), IPR000209 (Serine proteases, subtilase family)
22	puf-5	F54C9.8	n/a	chrII 8,576,562	C. elegans PUF-5 protein; contains similarity to Pfam domain PF00806 Pumilio-family RNA binding repeat contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR001313 (Pumilio RNA-binding region), IPR016024 (Armadillo-type fold)
23	C23G10.11	C23G10.11	n/a	chrIII 6,215,297	contains similarity to Interpro domain IPR003059 (Colicin lysis protein)
24	F54F7.3	F54F7.3	n/a	chrX 11,849,694	contains similarity to Amsacta moorei entomopoxvirus AMV135.; TR:Q9EMR4
25	nlp-28	B0213.3	n/a	chrV 3,988,091	C. elegans NLP-28 protein ; contains similarity to Ixodes scapularis Putative secreted salivary gland peptide.; TR:Q5Q982
26	B0513.4	B0513.4	n/a	chrIV 13,880,800	contains similarity to Ixodes scapularis Putative secreted protein.; TR:Q8MVF5
27	Y45F10C.4	Y45F10C.4	n/a	chrIV 13,663,763	contains similarity to Pfam domain PF07403 Protein of unknown function (DUF1505) contains similarity to Interpro domain IPR009981 (Protein of unknown function DUF1505)
28	clec-91	ZK858.3	n/a	chrI 9,126,597	C. elegans CLEC-91 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002353 (Type II antifreeze protein)
29	pos-1	F52E1.1	n/a	chrV 8,414,649	pos-1 encodes a CCCH-type zinc-finger protein; during embryogenesis, maternally provided POS-1 is essential for proper fate specification of germ cells, intestine, pharynx, and hypodermis; POS-1's role in cell fate specification is likely as a translational regulator, as POS-1 is required, in posterior blastomeres, for positive regulation of apx-1 mRNA translation and negative regulation of glp-1 mRNA translation via direct binding to the spatial control region (SCR) in the glp-1 mRNA 3' UTR; in regulating mRNA translation, POS-1 interacts with SPN-4, an RNP-type RNA binding protein, that may function to negatively regulate POS-1 activity; pos-1 mRNA is first detected in the gonads of L4 and adult animals, and is present uniformly in oocytes and newly fertilized embryos; during early embryonic divisions, pos-1 mRNA is present at higher levels in germline blastomeres until it disappears following the division of P4; POS-1 protein is first apparent at low levels in 1-cell embryos, with subsequent expression mirroring that of pos-1 mRNA: high levels in germline blastomeres until its disappearance after the P4 division; in the germline blastomeres P1, P2, P3, and P4, POS-1 colocalizes with cytoplasmic and perinuclear P granules.
30	Y62H9A.4	Y62H9A.4	n/a	chrX 11,880,601	contains similarity to Branchiostoma floridae Homeobox protein DLL homolog.; SW:HMDL_BRAFL
31	col-84	K12D12.3	n/a	chrII 11,869,021	C. elegans COL-84 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
32	C25A8.4	C25A8.4	n/a	chrIV 7,006,427	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
33	Y62H9A.6	Y62H9A.6	n/a	chrX 11,883,508	contains similarity to Brucella melitensis Hypothetical cytosolic protein BMEI0237.; TR:Q8YJ49
34	col-158	D2023.7	n/a	chrV 11,830,378	C. elegans COL-158 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
35	hsp-12.6	F38E11.2	n/a	chrIV 9,446,611	hsp-12.6 encodes a small heat-shock protein with very short N- and C-terminal domains flanking its central region of similarity to alpha-crystallins; HSP-12.6 is required in vivo for normal lifespan; HSP-12.6 is predominantly and ubiquitously expressed in L1 larvae without any obvious induction by stressors; but, in adult hermaphrodites, at least one HSP-12 is also expressed in spermatids (and perhaps spermatocytes), as well as in some vulval cells; moreover, hsp-12.6 is upregulated in 6- and 10-day-old daf-2 mutants, and this upregulation is highly reproducible (like that of five other genes, vit-2, vit-5, fat-3, nid-1, and mtl-1), strongly suggesting that hsp-12.6's expression may contribute to prolonged lifespan in dauer larvae; the hsp-12.6 promoter is predicted to have both DAF-16 and HSF-1 binding sites; hsp-12.6(RNAi) animals are shorter-lived than normal; recombinant HSP-12.6 is monomeric, and lacks molecular chaperone activity in vitro; hsp-12.6 induction requires DAF-16 and HSP-1, but not SMK-1.
36	dod-23	F49E12.2	n/a	chrII 8,398,700	C. elegans DOD-23 protein ;
37	clec-87	C25A1.8	n/a	chrI 10,184,962	clec-87 encodes a putatively secreted C-type lectin, paralogous to CLEC-88, C25B8.4, F26D10.12, and ZK858.3; CLEC-87 has a single chondroitin attachment site verified by mass spectrometry; CLEC-87 has no obvious function in mass RNAi assays.
38	W05F2.3	W05F2.3	n/a	chrI 3,368,102
39	cut-1	C47G2.1	n/a	chrII 11,270,278	cut-1 encodes a component of cuticlin, an insoluble residue of the nematode cuticle required for alae formation and radial shrinking during dauer differentiation; expressed specifically in the cuticle of dauer larvae and is secreted by the seam cells.
40	F22B3.4	F22B3.4	n/a	chrIV 11,411,714	F22B3.4 encodes a putative glucosamine-fructose 6-phosphate aminotransferase, paralogous to F07A11.2, thought to catalyse the first step of the hexosamine pathway to UDP-N-acetylglucosamine or UDP-N-acetylgalactosamine; F22B3.4 transcripts are enriched during oogenesis; F22B3.4(RNAi) animals have an osmotically-sensitive embryonic lethal phenotype, presumably because of defects in chitin and eggshell synthesis.
41	D1054.10	D1054.10	n/a	chrV 10,792,403	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IIV3
42	T01C3.4	T01C3.4	n/a	chrV 14,994,531	contains similarity to Pfam domain PF01674 Lipase (class 2) contains similarity to Interpro domain IPR002918 (Lipase, class 2)
43	C28C12.2	C28C12.2	n/a	chrIV 8,499,682
44	cpi-1	K08B4.6	n/a	chrIV 6,093,107	cpi-1 encodes a homolog of cysteine protease inhibitors (cystatins); cpi-1 is at least superficially dispensable for viability and gross morphology.
45	C08F11.11	C08F11.11	n/a	chrIV 13,647,063	contains similarity to Pfam domain PF07403 Protein of unknown function (DUF1505) contains similarity to Interpro domain IPR009981 (Protein of unknown function DUF1505)
46	nlp-32	F30H5.2	n/a	chrIII 486,349	C. elegans NLP-32 protein; contains similarity to Interpro domain IPR002952 (Eggshell protein)
47	tbh-1	H13N06.6	n/a	chrX 15,501,790	tbh-1 encodes a putative dopamine beta-hydroxylate orthologous to human DBH (OMIM:609312, mutated in dopamine beta-hydroxylase deficiency).
48	C53B7.2	C53B7.2	n/a	chrX 6,846,844	C53B7.2 encodes a putative secreted TIL-domain protease inhibitor paralogous to SWM-1, ISL-1, and the products of 11 other C. elegans genes; C53B7.2 and its relatives are collectively similar to other TIL-domain protease inhibitors from nematodes, insects, and vertebrates; C53B7.2 has no obvious function in mass RNAi assays.
49	nlp-39	C54C8.9	n/a	chrI 12,461,774	C. elegans NLP-39 protein ;
50	clec-61	ZK666.7	n/a	chrII 10,489,551	C. elegans CLEC-61 protein; contains similarity to Pfam domain PF00092 von Willebrand factor type A domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002035 (von Willebrand factor, type A)