UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C38D4.9	C38D4.9	7e-123	chrIII 4,803,842	contains similarity to Pfam domains PF01170 (Putative RNA methylase family UPF0020) , PF05175 (Methyltransferase small domain) , PF08242 (Methyltransferase domain) contains similarity to Interpro domains IPR007848 (Methyltransferase small), IPR000241 (Putative RNA methylase), IPR002296 (N6 adenine-specific DNA methyltransferase, N12 class), IPR013217 (Methyltransferase type 12), IPR002052 (N-6 adenine-specific DNA methylase, conserved site), IPR002723 (Protein of unknown function DUF43)
2	sra-25	T26E3.9	n/a	chrI 12,687,150	C. elegans SRA-25 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR000344 (Nematode chemoreceptor, Sra)
3	tsp-12	T14G10.6	n/a	chrIV 10,149,846	C. elegans TSP-12 protein; contains similarity to Pfam domain PF00335 Tetraspanin family contains similarity to Interpro domains IPR000301 (CD9/CD37/CD63 antigen), IPR008952 (Tetraspanin)
4	fbxa-181	F35E12.3	n/a	chrV 13,726,386	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
5	ZK1248.13	ZK1248.13	n/a	chrII 5,830,927
6	T22C1.5	T22C1.5	n/a	chrI 7,941,375	contains similarity to Saccharomyces cerevisiae Iswi One Complex; SGD:YMR044W
7	R144.6	R144.6	n/a	chrIII 5,003,956	contains similarity to Pfam domain PF07857 CEO family (DUF1632) contains similarity to Interpro domain IPR012435 (Protein of unknown function DUF1632)
8	mdt-10	T09A5.6	n/a	chrII 7,854,378	C. elegans MDT-10 protein ; contains similarity to Homo sapiens Mediator of RNA polymerase II transcription subunit 10; ENSEMBL:ENSP00000255764
9	rba-1	K07A1.11	n/a	chrI 9,617,307	C. elegans RBA-1 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
10	fbxa-120	C33E10.2	n/a	chrX 17,303,205	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
11	srj-8	T28A11.9	n/a	chrV 3,248,476	C. elegans SRJ-8 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
12	F55A3.5	F55A3.5	n/a	chrI 10,782,421	contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR000889 (Glutathione peroxidase)
13	C50E3.12	C50E3.12	n/a	chrV 7,621,252	contains similarity to Homo sapiens retinitis pigmentosa 1-like 1; ENSEMBL:ENSP00000371923
14	srh-215	T20B3.3	n/a	chrV 16,831,260	C. elegans SRH-215 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001356 (Homeobox)
15	F16H6.8	F16H6.8	n/a	chrV 18,214,941	contains similarity to Mycoplasma capricolum CLPA/CLPB family (Fragment).; TR:Q49064
16	F26A1.1	F26A1.1	n/a	chrIII 4,851,165
17	B0281.4	B0281.4	n/a	chrII 2,298,366	contains similarity to Pfam domain PF02214 K+ channel tetramerisation domain contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation)
18	srh-45	T03F7.2	n/a	chrV 11,304,292	C. elegans SRH-45 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR002259 (Delayed-early response protein/equilibrative nucleoside transporter), IPR008075 (Lipocalin-1 receptor)
19	ZC53.1	ZC53.1	n/a	chrX 1,912,323
20	str-5	T23D5.12	n/a	chrV 15,753,810	C. elegans STR-5 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001991 (Sodium:dicarboxylate symporter)
21	Y55H10A.2	Y55H10A.2	n/a	chrIV 3,364,812	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
22	B0207.8	B0207.8	n/a	chrI 5,951,441
23	R08H2.10	R08H2.10	n/a	chrV 15,373,870	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
24	fbxa-104	T06E6.13	n/a	chrV 15,422,084	C. elegans FBXA-104 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
25	C53D6.6	C53D6.6	n/a	chrIV 9,030,151	contains similarity to Pfam domain PF05699 hAT family dimerisation domain contains similarity to Interpro domain IPR008906 (HAT dimerisation)
26	srh-123	F08E10.3	n/a	chrV 17,474,702	C. elegans SRH-123 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
27	Y5F2A.4	Y5F2A.4	n/a	chrIV 11,077,311	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR007087 (Zinc finger, C2H2-type)
28	T08A9.4	T08A9.4	n/a	chrX 7,313,654	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
29	T15D6.10	T15D6.10	n/a	chrI 12,395,188	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
30	hex-3	Y39A1C.4	n/a	chrIII 10,851,789	hex-3 encodes a beta-N-acetylhexosaminidase.
31	srh-201	R03H4.9	n/a	chrV 9,013,008	C. elegans SRH-201 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
32	R09A8.2	R09A8.2	n/a	chrX 12,621,311	contains similarity to Staphylococcus aureus Serine-rich adhesin for platelets precursor (Staphylococcus aureusssurface protein A).; SW:Q8NUJ3
33	fbxb-21	ZC204.8	n/a	chrII 1,648,389	fbxb-21 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXB-21 also contains a C-terminal type 2 F-box-associated domain of presently unknown function.
34	C34D4.13	C34D4.13	n/a	chrIV 7,133,813
35	C06G3.8	C06G3.8	n/a	chrIV 7,032,043	contains similarity to Pfam domain PF01336 OB-fold nucleic acid binding domain contains similarity to Interpro domains IPR016027 (Nucleic acid-binding, OB-fold-like), IPR012340 (Nucleic acid-binding, OB-fold)
36	F53F8.5	F53F8.5	n/a	chrV 20,697,686	contains similarity to Pfam domain PF00536 SAM domain (Sterile alpha motif) contains similarity to Interpro domains IPR010993 (Sterile alpha motif homology), IPR013761 (Sterile alpha motif-type), IPR001660 (Sterile alpha motif SAM)
37	JC8.4	JC8.4	n/a	chrIV 13,243,908	contains similarity to Pfam domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region contains similarity to Interpro domains IPR016192 (APOBEC/CMP deaminase, zinc-binding), IPR002125 (CMP/dCMP deaminase, zinc-binding), IPR016193 (Cytidine deaminase-like)
38	set-4	C32D5.5	n/a	chrII 6,330,534	set-4 encodes a putative histone H4 lysine-20 methyltransferase; SET-4 is orthologous to Drosophila SUV4-20, and to human SUV420H1 (OMIM:610881) and SUV420H2; neither set-4(n4600) nor set-4(RNAi) have any obvious phenotypes.
39	sdz-36	ZK1251.7	n/a	chrIV 9,691,129	C. elegans SDZ-36 protein
40	F07H5.7	F07H5.7	n/a	chrII 8,793,642
41	pfd-6	F21C3.5	n/a	chrI 7,283,387	pfd-6 encodes a putative prefoldin 6 subunit, orthologous to human PFDN6 (OMIM:605660), required for normal microtubule growth and distal tip cell migration; PFD-6 is expressed cytoplasmically in most, if not all, tissues, including the germline; in mass RNAi assays, PFD-6 is required for normal mitotic spindle position, embryonic and larval viability, fertility, body shape, vulval development, and locomotion, and for normally rapid growth; pfd-6(RNAi) embryos show a reduced microtubule growth rate.
42	R11H6.5	R11H6.5	n/a	chrV 14,611,457	contains similarity to Pfam domain PF07528 DZF contains similarity to Interpro domains IPR006561 (DZF), IPR006116 (2-5-oligoadenylate synthetase, ubiquitin-like region)
43	F22B5.6	F22B5.6	n/a	chrII 8,455,504
44	C33F10.2	C33F10.2	n/a	chrII 4,830,501	contains similarity to Pfam domains PF00069 (Protein kinase domain) , PF00566 (TBC domain) contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR002290 (Serine/threonine protein kinase), IPR000195 (RabGAP/TBC), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
45	srj-45	T03D3.6	n/a	chrV 2,836,005	C. elegans SRJ-45 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR006162 (Phosphopantetheine attachment site)
46	pcbd-1	T10B11.1	n/a	chrI 6,951,540	T10B11.1 is orthologous to the human gene PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE (PCBD or TCF1; OMIM:126090), which when mutated leads to hyperphenylalaninemia with primapterinuria.
47	F02H6.4	F02H6.4	n/a	chrIV 14,217,678	contains similarity to Saccharomyces cerevisiae GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2; SGD:YAL035W
48	glb-20	R01E6.6	n/a	chrX 13,554,276	glb-20 encodes a globin; glb-20 transcription is higher in L3 and dauers than in young adults; glb-20 has no obvious function in mass RNAi assays.
49	F54D10.9	F54D10.9	n/a	chrII 3,830,742	contains similarity to Pfam domain PF03380 Caenorhabditis protein of unknown function, DUF282 contains similarity to Interpro domain IPR005044 (Protein of unknown function DUF282, Caenorhabditis species)
50	F19F10.5	F19F10.5	n/a	chrV 7,558,466	contains similarity to Pfam domain PF00178 Ets-domain contains similarity to Interpro domains IPR000418 (Ets), IPR011991 (Winged helix repressor DNA-binding)