UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C35E7.8	C35E7.8	0	chrI 10,809,484
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	his-14	ZK131.8	n/a	chrII 13,819,690	his-14 encodes an H4 histone.
4	his-1	T10C6.14	n/a	chrV 16,042,648	his-1 encodes an H4 histone; his-1 is contained within the histone gene cluster HIS1; transcript analysis suggests that it encodes the major class of H4 transcripts.
5	his-26	ZK131.1	n/a	chrII 13,825,596	his-26 encodes an H4 histone.
6	ZK1193.4	ZK1193.4	n/a	chrX 424,854
7	C35D10.5	C35D10.5	n/a	chrIII 4,862,879	contains similarity to Pfam domain PF03981 Ubiquinol-cytochrome C chaperone contains similarity to Interpro domain IPR007129 (Ubiquinol-cytochrome C chaperone)
8	cyp-37B1	F28G4.1	n/a	chrV 16,279,374	C. elegans CYP-37B1 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
9	C45G9.7	C45G9.7	n/a	chrIII 5,046,619	contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domains IPR017268 (Tax1-binding protein 3), IPR001478 (PDZ/DHR/GLGF)
10	F35F10.6	F35F10.6	n/a	chrV 3,288,593	contains similarity to Pfam domain PF06162 Caenorhabditis elegans protein of unknown function (DUF976) contains similarity to Interpro domains IPR010381 (Protein of unknown function DUF976, Caenorhabditis species), IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)
11	T25G12.3	T25G12.3	n/a	chrX 17,234,022
12	mce-1	D2030.5	n/a	chrI 7,582,722	C. elegans MCE-1 protein; contains similarity to Pfam domain PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily contains similarity to Interpro domain IPR004360 (Glyoxalase/bleomycin resistance protein/dioxygenase)
13	T28C6.8	T28C6.8	n/a	chrIV 8,830,136	contains similarity to Interpro domain IPR006629 (LPS-induced tumor necrosis factor alpha factor)
14	T13F3.6	T13F3.6	n/a	chrV 16,270,691	contains similarity to Paramecium tetraurelia 51B type surface protein.; TR:Q27167
15	F22H10.6	F22H10.6	n/a	chrX 16,690,126
16	B0222.9	B0222.9	n/a	chrV 9,170,672	contains similarity to Pfam domains PF00941 (FAD binding domain in molybdopterin dehydrogenase) , PF02738 (Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain) , PF00111 (2Fe-2S iron-sulfur cluster binding domain) , PF01799 ([2Fe-2S] binding domain) , PF01315 (Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR001041 (Ferredoxin), IPR002346 (Molybdopterin dehydrogenase, FAD-binding), IPR012675 (Beta-grasp fold, ferredoxin-type), IPR002888 ([2Fe-2S]-binding), IPR016166 (FAD-binding, type 2), IPR006058 (2Fe-2S ferredoxin, iron-sulphur binding site), IPR016169 (CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2), IPR000674 (Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead), IPR008274 (Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding)
17	lin-11	ZC247.3	n/a	chrI 10,251,797	lin-11 encodes a predicted LIM homeodomain transcription factor that affects vulval development, neuronal development and fate specification, utse cell differentiation, and fertility; it is expressed in some neurons, the vulva, pi cells and their progeny, and the spermatheca.
18	F20D1.4	F20D1.4	n/a	chrX 14,982,392	contains similarity to Pfam domain PF04845 PurA ssDNA and RNA-binding protein contains similarity to Interpro domain IPR006628 (PUR-alpha/beta/gamma, DNA/RNA-binding)
19	K08E4.4	K08E4.4	n/a	chrIV 12,066,699	contains similarity to Entamoeba histolytica Pyruvate,phosphate dikinase (EC 2.7.9.1) (Pyruvate,orthophosphatesdikinase).; SW:PODK_ENTHI
20	K09H9.7	K09H9.7	n/a	chrI 3,151,195	contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
21	K07G6.1	K07G6.1	n/a	chrII 1,741,871
22	F46C5.7	F46C5.7	n/a	chrII 8,839,705	contains similarity to Homo sapiens Splice isoform 1 of Q8WXQ8 Carboxypeptidase A5 precursor; ENSEMBL:ENSP00000289573
23	F53G2.2	F53G2.2	n/a	chrII 2,483,921
24	clec-21	T07H3.4	n/a	chrII 1,583,563	C. elegans CLEC-21 protein; contains similarity to Pfam domains PF00431 (CUB domain) , PF00059 (Lectin C-type domain) (2)contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
25	F48E8.3	F48E8.3	n/a	chrIII 5,462,687	contains similarity to Pfam domains PF00890 (FAD binding domain) , PF01266 (FAD dependent oxidoreductase) contains similarity to Interpro domains IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR010960 (Flavocytochrome c), IPR006076 (FAD dependent oxidoreductase), IPR003953 (Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal), IPR016040 (NAD(P)-binding)
26	B0391.10	B0391.10	n/a	chrV 15,589,316	contains similarity to Mus musculus Serine/threonine protein phosphatase 2B catalytic subunit, gammasisoform (EC 3.1.3.16) (Calmodulin-dependent calcineurin A subunit,sgamma isoform) (Calcineurin, testis-specific catalytic subunit)s(CAM-PRP catalytic subunit).; SW:P2BC_MOUSE
27	math-23	C46F9.2	n/a	chrII 1,903,365	The C46F9.2 gene encodes a protein closely similar to C46F9.3, which has a meprin-associated Traf homology (MATH) domain and may be involved in apoptosis.
28	C25H3.3	C25H3.3	n/a	chrII 5,694,437	contains similarity to Pfam domain PF03061 Thioesterase superfamily contains similarity to Interpro domains IPR006683 (Thioesterase superfamily), IPR003736 (Phenylacetic acid degradation-related protein)
29	ZC376.3	ZC376.3	n/a	chrV 14,169,887	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domain IPR002018 (Carboxylesterase, type B)
30	C34C12.7	C34C12.7	n/a	chrIII 3,485,435
31	F35F10.4	F35F10.4	n/a	chrV 3,292,977	contains similarity to Pfam domain PF04721 Domain of unknown function (DUF750) contains similarity to Interpro domain IPR006588 (Protein of unknown function PAW)
32	B0244.7	B0244.7	n/a	chrIII 5,732,127	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
33	hlh-15	C43H6.8	n/a	chrX 2,413,123	C. elegans HLH-15 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domains IPR001092 (Basic helix-loop-helix dimerisation region bHLH), IPR011598 (Helix-loop-helix DNA-binding)
34	mlt-7	ZK430.8	n/a	chrII 4,398,894	C. elegans MLT-7 protein; contains similarity to Pfam domains PF01549 (ShK domain-like) , PF03098 (Animal haem peroxidase) contains similarity to Interpro domains IPR010255 (Haem peroxidase), IPR013090 (Phospholipase A2, active site), IPR002007 (Haem peroxidase, animal), IPR003582 (Metridin-like ShK toxin)
35	C10G8.3	C10G8.3	n/a	chrV 5,313,573	contains similarity to Pfam domain PF00014 Kunitz/Bovine pancreatic trypsin inhibitor domain contains similarity to Interpro domain IPR002223 (Proteinase inhibitor I2, Kunitz metazoa)
36	srw-61	H25K10.7	n/a	chrIV 16,237,697	C. elegans SRW-61 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000611 (Neuropeptide Y receptor)
37	nspb-11	F35C5.10	n/a	chrII 12,907,461	C. elegans NSPB-11 protein ;
38	K08C7.7	K08C7.7	n/a	chrIV 10,665,006	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
39	fbxa-98	C08F11.5	n/a	chrIV 13,634,329	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
40	sago-1	K12B6.1	n/a	chrV 6,306,024	sago-1 encodes an Argonaute homolog that is partially required for the amplification phase of RNAi responses; a multiply mutant strain (MAGO), consisting of ppw-1(tm914), sago-1(tm1195), sago-2(tm894), F58G1.1(tm1019), C06A1.4(tm887), and M03D4.6(tm1144) alleles, is completely resistant to both germline and somatic RNAi; sago-1 is genetically redundant with ppw-1 and sago-2, with any one of these genes being able to transgenically partially restore the deficiency of MAGO worms; GFP-tagged SAGO-1 binds small secondary siRNAs produced by RNAi against GFP; MAGO is not transgenically rescued by rde-1; strains overexpressing GFP::SAGO-1 exhibited an enhanced level of RNAi overall, suggesting that SAGO-1 and its congeners are rate-limiting in vivo for RNAi.
41	K09C4.2	K09C4.2	n/a	chrX 3,297,833
42	fbxa-189	F47H4.9	n/a	chrV 17,346,436	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
43	F20D12.2	F20D12.2	n/a	chrIV 7,951,094	contains similarity to Pfam domain PF03399 SAC3/GANP/Nin1/mts3/eIF-3 p25 family contains similarity to Interpro domain IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)
44	htp-3	F57C9.5	n/a	chrI 4,828,421	C. elegans HTP-3 protein; contains similarity to Pfam domain PF02301 HORMA domain contains similarity to Interpro domain IPR003511 (DNA-binding HORMA)
45	T22C8.6	T22C8.6	n/a	chrII 8,628,922	contains similarity to Xenopus laevis Heterogeneous nuclear ribonucleoprotein A2 homolog 1 (hnRNP A2(A)).; SW:RO21_XENLA
46	W01A8.6	W01A8.6	n/a	chrI 7,072,690	contains similarity to Pfam domain PF00246 Zinc carboxypeptidase contains similarity to Interpro domain IPR000834 (Peptidase M14, carboxypeptidase A)
47	sdz-15	F23F12.4	n/a	chrIII 6,499,273	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
48	F25E2.2	F25E2.2	n/a	chrX 808,888	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
49	bli-5	F45G2.5	n/a	chrIII 13,428,598	bli-5 encodes a protease inhibitor that affects the integrity of the cuticle and the development of the bursa in the adult male.
50	ani-3	Y43F8C.14	n/a	chrV 19,696,771	ani-3 encodes one of three C. elegans anillins.