UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C27D8.2	C27D8.2	0	chrIV 12,713,741	contains similarity to Pfam domain PF07707 BTB And C-terminal Kelch contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated), IPR013089 (Kelch related)
2	T02E1.7	T02E1.7	n/a	chrI 8,209,741	contains similarity to Pfam domain PF02077 SURF4 family contains similarity to Interpro domains IPR002995 (Surfeit locus 4), IPR011592 (Surfeit locus 4-related)
3	C25A8.2	C25A8.2	n/a	chrIV 7,010,276	contains similarity to Interpro domains IPR005819 (Histone H5), IPR000079 (High mobility group protein HMG14 and HMG17)
4	C50D2.3	C50D2.3	n/a	chrII 106,848	contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
5	F52F12.5	F52F12.5	n/a	chrI 9,921,559	contains similarity to Homo sapiens Triadin; ENSEMBL:ENSP00000329278
6	C18H7.4	C18H7.4	n/a	chrIV 594,283	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
7	C24A11.1	C24A11.1	n/a	chrI 5,402,352
8	K03H1.12	K03H1.12	n/a	chrIII 9,941,867	contains similarity to Gallus gallus BDNF/NT-3 growth factors receptor precursor (EC 2.7.1.112) (TrkBstyrosine kinase) (Trk-B).; SW:TRKB_CHICK
9	ZK84.2	ZK84.2	n/a	chrII 6,015,055
10	K06H7.8	K06H7.8	n/a	chrIII 8,097,370	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
11	C10H11.7	C10H11.7	n/a	chrI 4,720,444	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
12	T08B6.4	T08B6.4	n/a	chrIV 4,907,072	contains similarity to Interpro domain IPR000694 (Proline-rich region)
13	Y43F8A.2	Y43F8A.2	n/a	chrV 19,373,855	contains similarity to Homo sapiens Cytokine receptor common beta chain precursor; ENSEMBL:ENSP00000262825
14	ZK1248.5	ZK1248.5	n/a	chrII 5,811,119	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domains IPR001940 (Peptidase S1C, HrtA/DegP2/Q/S), IPR009658 (Protein of unknown function DUF1248)
15	Y106G6H.13	Y106G6H.13	n/a	chrI 10,471,577	contains similarity to Bacillus cereus Hypothetical membrane spanning protein.; TR:Q813N7
16	K07A12.5	K07A12.5	n/a	chrI 8,694,231	contains similarity to Plasmodium falciparum Glutamic acid-rich protein precursor.; SW:GARP_PLAFF
17	C52E4.7	C52E4.7	n/a	chrV 11,995,047	C52E4.7 encodes a member of the histidine phosphatase superfamily orthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP), human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736); C52E4.7 is also paralogous to C. elegans F09C12.8, F53B6.7, F55A11.11, and T07F12.1; while no explicit prediction has been made for C52E4.7's activity, it might be catalytically inactive; as loss of C52E4.7 activity results in no obvious defects, the precise role of C52E4.7 in C. elegans development and/or behavior is not yet known.
18	K07A1.5	K07A1.5	n/a	chrI 9,591,179	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR001859 (Ribosomal protein P2), IPR003060 (Pyocin S killer protein)
19	ttr-9	C33A12.15	n/a	chrIV 9,505,947	C. elegans TTR-9 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
20	B0511.11	B0511.11	n/a	chrI 10,649,379
21	spe-11	F48C1.7	n/a	chrI 5,331,412	spe-11 encodes a novel protein that is required for early embryonic development and for regulating the dynamic morphology of sperm pseudopods; although the precise biological role of SPE-11 is not yet known, SPE-11 is one of the few paternally provided proteins known to be essential for embryogenesis, and may constitute a sperm-associated factor required for oocyte activation; SPE-11 is first detected in the nuclei of primary spermatocytes and then remains tightly associated with sperm chromatin until fertilization at which point it appears to be degraded.
22	F13G11.2	F13G11.2	n/a	chrIV 14,633,712	contains similarity to Rattus norvegicus Chondroadherin precursor (Cartilage leucine-rich protein).; SW:CHAD_RAT
23	B0334.10	B0334.10	n/a	chrII 11,518,945	contains similarity to Vaccinia virus TB17L.; TR:Q9JF36
24	Y106G6G.1	Y106G6G.1	n/a	chrI 10,329,688	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I4Z6
25	B0218.7	B0218.7	n/a	chrIV 8,165,316
26	F54C8.1	F54C8.1	n/a	chrIII 9,440,304	contains similarity to Pfam domains PF00725 (3-hydroxyacyl-CoA dehydrogenase, C-terminal domain) , PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain) contains similarity to Interpro domains IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR006108 (3-hydroxyacyl-CoA dehydrogenase, C-terminal), IPR013328 (Dehydrogenase, multihelical), IPR006176 (3-hydroxyacyl-CoA dehydrogenase, NAD binding), IPR006180 (3-hydroxyacyl-CoA dehydrogenase, conserved site), IPR016040 (NAD(P)-binding), IPR006036 (Potassium uptake protein TrkA)
27	C08H9.10	C08H9.10	n/a	chrII 9,854,672	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
28	F42C5.5	F42C5.5	n/a	chrIV 7,293,350	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
29	C18E9.8	C18E9.8	n/a	chrII 8,986,939	C18E9.8 is orthologous to the human gene JOINED TO JAZF1 (JJAZ1; OMIM:606245), which when mutated leads to disease.
30	cyc-2.2	ZC116.2	n/a	chrV 12,611,951	ZC116.2 encodes, along with E04A4.7, one of two C. elegans cytochrome c proteins; the product of ZC116.2 is predicted to function in the electron transport chain by transferring electrons from respiratory chain Complex III to Complex IV; RNAi screens indicate the ZC116.2 activity is required for embryonic development as well as for normal body size and rates of growth.
31	F55D12.6	F55D12.6	n/a	chrI 7,902,571	contains similarity to Interpro domains IPR000104 (Antifreeze protein, type I), IPR001865 (Ribosomal protein S2), IPR001859 (Ribosomal protein P2), IPR001778 (Pollen allergen Poa pIX/Phl pVI, C-terminal)
32	K08C9.1	K08C9.1	n/a	chrI 11,485,648
33	T19D12.5	T19D12.5	n/a	chrII 6,635,499	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
34	F10E9.2	F10E9.2	n/a	chrIII 8,313,421	contains similarity to Interpro domain IPR001841 (Zinc finger, RING-type)
35	C28C12.1	C28C12.1	n/a	chrIV 8,502,192	contains similarity to Interpro domain IPR002217 (Lipoprotein LPP20)
36	F23C8.7	F23C8.7	n/a	chrI 2,423,740	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
37	C03B8.1	C03B8.1	n/a	chrIII 7,716,961
38	C17F3.3	C17F3.3	n/a	chrI 6,682,871	contains similarity to Interpro domains IPR000956 (Stathmin), IPR005819 (Histone H5), IPR000533 (Tropomyosin), IPR005398 (Tubby, N-terminal)
39	C47E8.1	C47E8.1	n/a	chrV 14,666,582
40	W03D8.5	W03D8.5	n/a	chrI 2,817,203	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
41	Y106G6D.3	Y106G6D.3	n/a	chrI 10,113,137	contains similarity to Ensis minor Nuclear protein.; TR:Q24898
42	R03D7.5	R03D7.5	n/a	chrII 10,948,319	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
43	fbxa-178	F17A9.1	n/a	chrV 6,116,834	F17A9.1 encodes a divergent ONECUT class CUT homeobox protein with a single N-terminal cut domain; F17A9.1 has an atypical tyrosine residue at position 48 of its homeodomain rather than a phenylalanine or tryptophan residue; the cut domain may be a compact DNA-binding domain composed of alpha helices; phylogenetically, F17A9.1 is (somewhat distantly) affiliated with C17H12.9, Drosophila ONECUT, and mammalian HNF6 proteins; F17A9.1 has no obvious function in mass RNAi assays.
44	F56A11.6	F56A11.6	n/a	chrIV 581,274	contains similarity to Interpro domains IPR000175 (Sodium:neurotransmitter symporter), IPR000533 (Tropomyosin)
45	K02F6.2	K02F6.2	n/a	chrII 2,552,853	contains similarity to Interpro domains IPR002110 (Ankyrin), IPR001357 (BRCT)
46	ZC412.5	ZC412.5	n/a	chrV 14,874,791
47	C04F12.6	C04F12.6	n/a	chrI 9,693,209	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR013303 (Wnt-14 protein)
48	B0218.5	B0218.5	n/a	chrIV 8,155,831	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
49	ZK1307.3	ZK1307.3	n/a	chrII 9,652,584	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
50	dlc-6	Y106G6G.3	n/a	chrI 10,323,861	dlc-6 encodes a putative dynein light chain 1; DLC-6 is orthologous to human DYNLL1 (OMIM:601562) and DYNLL2 (OMIM:608942), but much more divergent from them than its paralog DLC-1; DLC-6's other paralogs are DLC-2/-5; DLC-6 has no obvious function in mass RNAi assays.