UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C18B12.1	C18B12.1	6e-32	chrX 15,012,725	contains similarity to Bacillus anthracis Flagellar biosynthetic protein FlhB, putative.; TR:Q81SE5
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	ZC482.4	ZC482.4	n/a	chrIII 12,766,680	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
4	C08H9.13	C08H9.13	n/a	chrII 9,870,236	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR003624 (Leukemia inhibitory factor), IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
5	K10H10.5	K10H10.5	n/a	chrII 14,502,114	contains similarity to Interpro domain IPR001030 (Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha)
6	Y32B12A.3	Y32B12A.3	n/a	chrV 16,494,024	contains similarity to Pfam domain PF01596 O-methyltransferase contains similarity to Interpro domain IPR002935 (O-methyltransferase, family 3)
7	C04F12.1	C04F12.1	n/a	chrI 9,676,100	contains similarity to Pfam domain PF02171 Piwi domain contains similarity to Interpro domains IPR003165 (Stem cell self-renewal protein Piwi), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
8	nhr-208	R07B7.15	n/a	chrV 12,095,111	C. elegans NHR-208 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
9	Y37D8A.4	Y37D8A.4	n/a	chrIII 12,837,949	contains similarity to Pfam domain PF00017 SH2 domain contains similarity to Interpro domain IPR000980 (SH2 motif)
10	W05B2.7	W05B2.7	n/a	chrIII 10,989,906	contains similarity to Interpro domain IPR000533 (Tropomyosin)
11	T27F6.8	T27F6.8	n/a	chrI 12,498,624	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
12	math-10	C16C4.15	n/a	chrII 1,872,348	C. elegans MATH-10 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
13	lgc-32	T19D7.1	n/a	chrX 674,438	C. elegans LGC-32 protein; contains similarity to Interpro domain IPR006202 (Neurotransmitter-gated ion-channel ligand-binding)
14	C52A11.3	C52A11.3	n/a	chrII 10,737,705	contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
15	srx-9	R13D7.6	n/a	chrV 7,394,485	C. elegans SRX-9 protein; contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like)
16	srw-24	C41G6.7	n/a	chrV 15,224,639	C. elegans SRW-24 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
17	sri-14	M01G12.1	n/a	chrI 12,135,356	C. elegans SRI-14 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
18	C23H4.4	C23H4.4	n/a	chrX 12,231,444	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domains IPR008262 (Lipase, active site), IPR000062 (Thymidylate kinase), IPR002018 (Carboxylesterase, type B)
19	K09H11.4	K09H11.4	n/a	chrV 5,724,796	contains similarity to Drosophila melanogaster Flybase gene name is CG2839-PA;; FLYBASE:CG2839
20	srxa-4	F18E3.1	n/a	chrV 7,421,068	C. elegans SRXA-4 protein; contains similarity to Pfam domain PF03383 Caenorhabditis serpentine receptor-like protein, class xa contains similarity to Interpro domain IPR005047 (Protein of unknown function DUF286, G protein-coupled receptor-like putative Caenorhabditis species)
21	C48E7.6	C48E7.6	n/a	chrI 6,244,688	contains similarity to Drosophila pseudoobscura GA10211-PA (Fragment).; TR:Q29MP8
22	ZK1128.7	ZK1128.7	n/a	chrIII 10,137,921	contains similarity to Pfam domain PF00011 Hsp20/alpha crystallin family contains similarity to Interpro domains IPR002068 (Heat shock protein Hsp20), IPR008978 (HSP20-like chaperone), IPR001436 (Alpha crystallin/Heat shock protein)
23	egl-38	C04G2.7	n/a	chrIV 10,108,695	The egl-38 gene encodes a Pax5 homolog.
24	acl-2	T06E8.1	n/a	chrV 10,029,692	T06E8.1 is orthologous to the human gene 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE 2 (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE, BETA) (AGPAT2; OMIM:603100), which when mutated leads to disease; T06E8.1 protein is predicted to be mitochondrial.
25	R106.2	R106.2	n/a	chrX 17,484,993	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000611 (Neuropeptide Y receptor), IPR000276 (GPCR, rhodopsin-like)
26	srv-22	H04M03.9	n/a	chrIV 5,879,196	C. elegans SRV-22 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
27	T04C9.2	T04C9.2	n/a	chrIII 5,992,002
28	K03H1.8	K03H1.8	n/a	chrIII 9,945,970	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domain IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
29	sre-7	K02E11.2	n/a	chrV 14,245,132	C. elegans SRE-7 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
30	Y43F8C.6	Y43F8C.6	n/a	chrV 19,636,948	contains similarity to Interpro domains IPR001412 (Aminoacyl-tRNA synthetase, class I, conserved site), IPR009057 (Homeodomain-like)
31	T19D2.3	T19D2.3	n/a	chrX 3,939,726
32	sri-15	F15H9.2	n/a	chrI 12,152,667	C. elegans SRI-15 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
33	srx-67	K07C6.10	n/a	chrV 3,917,627	C. elegans SRX-67 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
34	K07H8.5	K07H8.5	n/a	chrIV 8,272,091
35	pik-1	K09B11.1	n/a	chrIV 13,419,126	The pik-1 gene encodes a pelle/IRAK kinase homolog that may be involved in apoptosis.
36	clec-39	T25E12.7	n/a	chrV 16,740,408	C. elegans CLEC-39 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR003990 (Pancreatitis-associated protein), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
37	M162.6	M162.6	n/a	chrV 19,782,521	contains similarity to Interpro domain IPR016187 (C-type lectin fold)
38	F28H6.7	F28H6.7	n/a	chrX 14,116,353	contains similarity to Interpro domain IPR013032 (EGF-like region, conserved site)
39	srh-190	C17E7.2	n/a	chrV 3,903,811	C. elegans SRH-190 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
40	srsx-38	T26E4.14	n/a	chrV 15,806,689	C. elegans SRSX-38 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
41	srh-207	ZK262.1	n/a	chrV 18,409,607	C. elegans SRH-207 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
42	tag-244	C34H4.3	n/a	chrIV 1,551,970	C. elegans TAG-244 protein; contains similarity to Pfam domain PF03409 Protein of unknown function (DUF274) contains similarity to Interpro domain IPR005071 (Protein of unknown function DUF274)
43	W02B3.3	W02B3.3	n/a	chrIII 668,260
44	C36C9.5	C36C9.5	n/a	chrX 1,701,859
45	F22E5.2	F22E5.2	n/a	chrII 2,665,821
46	math-17	C16C4.9	n/a	chrII 1,880,205	C. elegans MATH-17 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
47	F56F3.3	F56F3.3	n/a	chrIII 4,458,938	contains similarity to Drosophila dasycnemia Wingless (Fragment).; TR:O46305
48	str-145	F58G4.7	n/a	chrV 8,097,583	C. elegans STR-145 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
49	F29A7.4	F29A7.4	n/a	chrII 2,750,080	contains similarity to Homo sapiens Uncharacterized protein C2orf32; ENSEMBL:ENSP00000263655
50	K09F5.1	K09F5.1	n/a	chrX 7,740,721