UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C16C8.8	C16C8.8	9e-62	chrII 3,461,412
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	T19D2.3	T19D2.3	n/a	chrX 3,939,726
4	Y39F10A.3	Y39F10A.3	n/a	chrII 782,448	contains similarity to Pfam domain PF05050 Protein of unknown function (DUF672) contains similarity to Interpro domain IPR007744 (Protein of unknown function DUF672)
5	F44D12.8	F44D12.8	n/a	chrIV 10,024,253	contains similarity to Homo sapiens Isoform 1 of MAP7 domain-containing protein 1; ENSEMBL:ENSP00000362244
6	srj-8	T28A11.9	n/a	chrV 3,248,476	C. elegans SRJ-8 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
7	F56F4.4	F56F4.4	n/a	chrI 6,138,476
8	T22H9.3	T22H9.3	n/a	chrV 345,542	contains similarity to Pfam domains PF02170 (PAZ domain) , PF02171 (Piwi domain) contains similarity to Interpro domains IPR003165 (Stem cell self-renewal protein Piwi), IPR003100 (Argonaute and Dicer protein, PAZ), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
9	F21A3.4	F21A3.4	n/a	chrV 15,537,300	contains similarity to Homo sapiens hypothetical protein LOC338999 isoform 2; HI:HIT000389435
10	F20A1.8	F20A1.8	n/a	chrV 7,047,347
11	F49F1.10	F49F1.10	n/a	chrIV 4,138,758	contains similarity to Pfam domain PF00337 Galactoside-binding lectin contains similarity to Interpro domains IPR001079 (Galectin, galactose-binding lectin), IPR013320 (Concanavalin A-like lectin/glucanase, subgroup), IPR008985 (Concanavalin A-like lectin/glucanase)
12	F59A1.6	F59A1.6	n/a	chrV 17,685,618	contains similarity to Brachydanio rerio SI:dZ186F8.4 (Novel immune-type receptor) (Fragment).; TR:Q8UVA1
13	T01B6.4	T01B6.4	n/a	chrX 2,337,975
14	F49F1.3	F49F1.3	n/a	chrIV 4,115,363	contains similarity to Interpro domain IPR000694 (Proline-rich region)
15	clec-217	F26D11.9	n/a	chrV 7,958,038	C. elegans CLEC-217 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
16	F20A1.2	F20A1.2	n/a	chrV 7,047,678	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
17	W02B3.7	W02B3.7	n/a	chrIII 691,490	contains similarity to Interpro domain IPR009644 (Fukutin-related)
18	T06C10.3	T06C10.3	n/a	chrIV 7,871,932	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
19	Y43F8C.17	Y43F8C.17	n/a	chrV 19,712,303	contains similarity to Rhodosporidium toruloides Rhodotorucine A precursor 2.; SW:RHT2_RHOTO
20	clec-130	W10G11.14	n/a	chrII 3,574,098	C. elegans CLEC-130 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
21	clc-4	T05A10.2	n/a	chrX 10,783,378	clc-4 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; CLC-4 is worm-specific, with obvious homologs only in C. elegans; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
22	C18G1.3	C18G1.3	n/a	chrV 4,762,839	contains similarity to Interpro domain IPR000694 (Proline-rich region)
23	F53C3.1	F53C3.1	n/a	chrII 3,912,702	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
24	Y113G7C.1	Y113G7C.1	n/a	chrV 20,316,312	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000217 (Tubulin), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase), IPR003125 (Protein of unknown function WSN)
25	Y66A7A.4	Y66A7A.4	n/a	chrIII 11,614,038
26	F19H6.5	F19H6.5	n/a	chrX 12,364,231	contains similarity to Homo sapiens Splice isoform 1 of O75143 Hypothetical protein KIAA0652; ENSEMBL:ENSP00000310321
27	T04A8.13	T04A8.13	n/a	chrIII 4,709,804	contains similarity to Interpro domain IPR000694 (Proline-rich region)
28	F46A8.4	F46A8.4	n/a	chrI 11,241,589	contains similarity to Pfam domain PF00337 Galactoside-binding lectin contains similarity to Interpro domains IPR001079 (Galectin, galactose-binding lectin), IPR013320 (Concanavalin A-like lectin/glucanase, subgroup), IPR008985 (Concanavalin A-like lectin/glucanase)
29	R53.8	R53.8	n/a	chrII 9,977,190	contains similarity to Homo sapiens Putative uncharacterized protein (Fragment); ENSEMBL:ENSP00000333119
30	clec-96	ZK39.5	n/a	chrI 11,151,582	C. elegans CLEC-96 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR001202 (WW/Rsp5/WWP)
31	M7.10	M7.10	n/a	chrIV 11,102,300	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domains IPR001703 (Alpha-fetoprotein), IPR003677 (Protein of unknown function DUF148)
32	Y69E1A.3	Y69E1A.3	n/a	chrIV 10,953,548	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
33	nhr-225	T27B7.2	n/a	chrV 2,289,169	C. elegans NHR-225 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
34	C46H11.6	C46H11.6	n/a	chrI 5,022,021	contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
35	Y116A8C.37	Y116A8C.37	n/a	chrIV 17,130,526	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domain IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
36	srsx-37	M01B2.7	n/a	chrV 15,258,341	C. elegans SRSX-37 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
37	F16G10.10	F16G10.10	n/a	chrII 2,390,323	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
38	C25F9.8	C25F9.8	n/a	chrV 19,395,796	contains similarity to Nicotiana glutinosa Ribonuclease NW.; TR:Q7XZV5
39	T28D9.9	T28D9.9	n/a	chrII 6,484,502
40	F59B2.12	F59B2.12	n/a	chrIII 9,019,194	contains similarity to Homo sapiens Similar to Dentin sialophosphoprotein preproprotein; ENSEMBL:ENSP00000282478
41	C49A1.3	C49A1.3	n/a	chrI 14,218,454	contains similarity to Pfam domain PF01062 Bestrophin contains similarity to Interpro domain IPR000615 (Bestrophin)
42	C24D10.1	C24D10.1	n/a	chrIV 5,167,373	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
43	M110.7	M110.7	n/a	chrII 8,235,210	contains similarity to Pfam domain PF01237 Oxysterol-binding protein contains similarity to Interpro domain IPR000648 (Oxysterol-binding protein)
44	F13E9.5	F13E9.5	n/a	chrIV 10,883,638	contains similarity to Helicobacter pylori;Helicobacter pylori J99 Hypothetical protein HP0031/JHP0027.; SW:Y031_HELPY
45	F47B3.1	F47B3.1	n/a	chrI 3,972,934	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
46	M162.7	M162.7	n/a	chrV 19,789,204	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
47	T05A7.6	T05A7.6	n/a	chrII 4,670,226	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
48	K12H6.5	K12H6.5	n/a	chrII 2,826,180
49	C05B5.1	C05B5.1	n/a	chrIII 9,987,900	contains similarity to Clostridium acetobutylicum Membrane associated chemotaxis sensory transducer protein (MSPsdomain and HAMP domain).; TR:Q97JD4
50	T05D4.5	T05D4.5	n/a	chrIII 13,582,099	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein), IPR000533 (Tropomyosin)