UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C09H10.9	C09H10.9	0	chrII 11,105,179
2	R155.2	R155.2	n/a	chrIII 1,967,000	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR013992 (Adenylate cyclase-associated CAP, N-terminal), IPR000387 (Protein-tyrosine phosphatase), IPR003125 (Protein of unknown function WSN)
3	ZC262.4	ZC262.4	n/a	chrIII 8,333,867
4	Y57G7A.5	Y57G7A.5	n/a	chrII 1,274,377
5	col-53	M01A12.1	n/a	chrI 5,645,857	C. elegans COL-53 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
6	F26F2.1	F26F2.1	n/a	chrV 20,555,875	contains similarity to Drosophila melanogaster Flybase gene name is CG2839-PA;; FLYBASE:CG2839
7	clec-142	K01C8.8	n/a	chrII 8,279,792	C. elegans CLEC-142 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR001304 (C-type lectin)
8	B0511.11	B0511.11	n/a	chrI 10,649,379
9	F30F8.2	F30F8.2	n/a	chrI 7,829,032	contains similarity to Pfam domains PF04960 (Glutaminase) , PF00023 (Ankyrin repeat) (3)contains similarity to Interpro domains IPR015868 (Glutaminase, core), IPR002110 (Ankyrin), IPR007043 (Glutaminase), IPR012338 (Beta-lactamase-type transpeptidase fold)
10	C28C12.1	C28C12.1	n/a	chrIV 8,502,192	contains similarity to Interpro domain IPR002217 (Lipoprotein LPP20)
11	K05F1.8	K05F1.8	n/a	chrII 5,799,460
12	Y106G6G.1	Y106G6G.1	n/a	chrI 10,329,688	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I4Z6
13	Y106G6E.1	Y106G6E.1	n/a	chrI 10,199,352	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
14	F38A5.8	F38A5.8	n/a	chrIV 6,600,170
15	W02A2.8	W02A2.8	n/a	chrIV 13,356,775
16	C36F7.5	C36F7.5	n/a	chrI 9,575,404	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR003979 (Tropoelastin), IPR013286 (Annexin, type VII)
17	W09C3.8	W09C3.8	n/a	chrI 4,716,751
18	C26B2.2	C26B2.2	n/a	chrIV 8,021,582
19	ZK262.4	ZK262.4	n/a	chrV 18,424,010	contains similarity to Arabidopsis thaliana Similarity to salt-inducible protein.; TR:Q9LVA2
20	F20B6.1	F20B6.1	n/a	chrX 4,200,926	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
21	C27F2.6	C27F2.6	n/a	chrIII 4,980,070
22	K02F6.3	K02F6.3	n/a	chrII 2,547,902	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
23	C18H2.3	C18H2.3	n/a	chrIII 7,685,691	contains similarity to Pfam domains PF00023 (Ankyrin repeat) (2), PF00533 (BRCA1 C Terminus (BRCT) domain) (2)contains similarity to Interpro domains IPR002110 (Ankyrin), IPR001357 (BRCT)
24	T08H10.1	T08H10.1	n/a	chrV 4,484,972	contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domain IPR001395 (Aldo/keto reductase)
25	clec-153	F10F2.8	n/a	chrIII 4,636,376	C. elegans CLEC-153 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
26	T19D12.5	T19D12.5	n/a	chrII 6,635,499	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
27	F53G12.8	F53G12.8	n/a	chrI 114,244	contains similarity to Homo sapiens Putative uncharacterized protein (Fragment); ENSEMBL:ENSP00000333119
28	kin-5	T13H10.1	n/a	chrIV 9,968,114	kin-5 encodes a predicted protein tyrosine kinase that is most closely related to the non-receptor tyrosine kinases Fes/Fps and Fer that contain an SH2 domain and a tyrosine kinase domain (OMIM:190030, murine Fes appears to be required for hemopoietic homeostasis); as loss of kin-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kin-5 in C. elegans development and/or behavior is not yet known.
29	clec-129	W10G11.15	n/a	chrII 3,572,181	C. elegans CLEC-129 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
30	ttr-9	C33A12.15	n/a	chrIV 9,505,947	C. elegans TTR-9 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
31	Y57G11B.3	Y57G11B.3	n/a	chrIV 14,572,262	contains similarity to Pfam domain PF00042 Globin contains similarity to Interpro domains IPR012292 (Globin), IPR009050 (Globin-like), IPR013314 (Globin, lamprey/hagfish type), IPR000971 (Globin, subset)
32	B0218.7	B0218.7	n/a	chrIV 8,165,316
33	C52E4.7	C52E4.7	n/a	chrV 11,995,047	C52E4.7 encodes a member of the histidine phosphatase superfamily orthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP), human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736); C52E4.7 is also paralogous to C. elegans F09C12.8, F53B6.7, F55A11.11, and T07F12.1; while no explicit prediction has been made for C52E4.7's activity, it might be catalytically inactive; as loss of C52E4.7 activity results in no obvious defects, the precise role of C52E4.7 in C. elegans development and/or behavior is not yet known.
34	C17C3.11	C17C3.11	n/a	chrII 5,538,392	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
35	R10D12.10	R10D12.10	n/a	chrV 13,957,221	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
36	D2024.1	D2024.1	n/a	chrIV 7,248,474	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
37	F41G3.5	F41G3.5	n/a	chrII 6,748,034	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
38	Y45F10B.8	Y45F10B.8	n/a	chrIV 13,577,771	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000533 (Tropomyosin)
39	ZK1225.5	ZK1225.5	n/a	chrI 13,217,724
40	C04E6.5	C04E6.5	n/a	chrV 5,903,504	contains similarity to Pfam domain PF00443 Ubiquitin carboxyl-terminal hydrolase contains similarity to Interpro domain IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2)
41	K01D12.15	K01D12.15	n/a	chrV 12,386,487	contains similarity to Interpro domains IPR001859 (Ribosomal protein P2), IPR000976 (Wilm's tumour protein)
42	ZK84.2	ZK84.2	n/a	chrII 6,015,055
43	R07C3.13	R07C3.13	n/a	chrII 927,201
44	C02F5.2	C02F5.2	n/a	chrIII 8,249,732
45	tba-6	F32H2.9	n/a	chrI 8,996,289	C. elegans TBA-6 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain) , PF03953 (Tubulin/FtsZ family, C-terminal domain) contains similarity to Interpro domains IPR002454 (Gamma tubulin), IPR002452 (Alpha tubulin), IPR002453 (Beta tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase), IPR004057 (Epsilon tubulin), IPR002967 (Delta tubulin), IPR000158 (Cell division protein FtsZ, N-terminal), IPR008280 (Tubulin/FtsZ, C-terminal)
46	C27B7.6	C27B7.6	n/a	chrIV 8,904,670	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
47	Y51A2B.6	Y51A2B.6	n/a	chrV 18,393,120	contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
48	F56F4.3	F56F4.3	n/a	chrI 6,142,912	contains similarity to Pfam domain PF00209 Sodium:neurotransmitter symporter family contains similarity to Interpro domains IPR000175 (Sodium:neurotransmitter symporter), IPR001411 (Tetracycline resistance protein, TetB), IPR002208 (SecY protein), IPR002229 (Blood group Rhesus C/E and D polypeptide)
49	K02F6.2	K02F6.2	n/a	chrII 2,552,853	contains similarity to Interpro domains IPR002110 (Ankyrin), IPR001357 (BRCT)
50	spe-9	C17D12.6	n/a	chrI 11,584,385	spe-9 encodes an EGF repeat-containing protein with a short intracellular domain; SPE-9 is required autonomously in sperm for fertilization, and by homology, likely mediates an adhesive or signaling event necessary for proper oocyte fertilization; spe-9 mRNA is detected solely in animals that are engaged in spermatogenesis; in spermatids, SPE-9 is found at or near the cell surface; following sperm activation, SPE-9 is found primarily on the pseudopod.