UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C09D4.3	C09D4.3	0	chrI 5,489,487	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
2	T11G6.7	T11G6.7	n/a	chrIV 10,844,729	contains similarity to Fundulus heteroclitus Lens major intrinsic protein.; TR:Q9PUE2
3	K04F1.8	K04F1.8	n/a	chrV 1,667,509
4	C08G5.3	C08G5.3	n/a	chrII 744,119	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
5	F55F1.1	F55F1.1	n/a	chrX 2,779,060	contains similarity to Homo sapiens Rho family guanine-nucleotide exchange factor; ENSEMBL:ENSP00000328118
6	F47C12.7	F47C12.7	n/a	chrIV 3,994,654	contains similarity to Pfam domain PF05912 Caenorhabditis elegans protein of unknown function (DUF870) contains similarity to Interpro domain IPR008588 (Protein of unknown function DUF870, Caenorhabditis species)
7	F49F1.6	F49F1.6	n/a	chrIV 4,122,198	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
8	clec-55	F08H9.9	n/a	chrV 14,480,717	C. elegans CLEC-55 protein; contains similarity to Pfam domains PF00431 (CUB domain) (2), PF00059 (Lectin C-type domain) contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
9	F48B9.3	F48B9.3	n/a	chrX 2,165,518	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domain IPR005514 (Protein of unknown function DUF316)
10	fbxa-188	F47H4.8	n/a	chrV 17,343,887	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
11	C17H12.6	C17H12.6	n/a	chrIV 6,821,899	contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domain IPR003366 (CUB-like region)
12	spe-19	Y113G7A.10	n/a	chrV 20,039,581	C. elegans SPE-19 protein ;
13	F26A1.3	F26A1.3	0.0003	chrIII 4,827,878	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
14	F10G8.2	F10G8.2	n/a	chrI 10,022,221	contains similarity to Interpro domain IPR011009 (Protein kinase-like)
15	C14B1.3	C14B1.3	n/a	chrIII 3,704,316	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
16	W03B1.9	W03B1.9	n/a	chrIV 4,354,761	contains similarity to Interpro domain IPR000694 (Proline-rich region)
17	Y57G11C.23	Y57G11C.23	n/a	chrIV 14,858,495	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR005828 (General substrate transporter), IPR016196 (MFS general substrate transporter)
18	sma-1	R31.1	n/a	chrV 11,908,070	sma-1 encodes a beta-H spectrin; during embryonic morphogenesis, SMA-1 activity is required for a normal rate of elongation and thus, for a wild-type body length upon hatching; in addition, SMA-1 is required for proper morphogenesis of the pharynx and the excretory cell; sma-1 mRNA transcripts are first detected in hypodermal cells at the beginning of embryonic morphogenesis with later expression visible in the developing pharynx, intestine, and excretory cell.
19	C34G6.3	C34G6.3	n/a	chrI 5,897,020	contains similarity to Interpro domain IPR005819 (Histone H5)
20	K02F2.5	K02F2.5	n/a	chrI 6,807,588
21	srd-23	Y40H7A.5	n/a	chrIV 15,181,398	C. elegans SRD-23 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
22	K08C9.6	K08C9.6	n/a	chrI 11,499,274	contains similarity to Archaeoglobus fulgidus Hypothetical protein AF0327.; TR:O29920
23	F38E9.6	F38E9.6	n/a	chrX 16,440,044
24	W01B6.3	W01B6.3	n/a	chrIV 10,071,407	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
25	irk-1	R03E9.4	n/a	chrX 6,769,400	C. elegans IRK-1 protein; contains similarity to Pfam domain PF01007 Inward rectifier potassium channel contains similarity to Interpro domains IPR013521 (Potassium channel, inwardly rectifying, Kir, conserved region 2), IPR014756 (Immunoglobulin E-set), IPR013518 (Potassium channel, inwardly rectifying, Kir, cytoplasmic), IPR001838 (Potassium channel, inwardly rectifying, Kir-like)
26	F07E5.8	F07E5.8	n/a	chrII 2,074,096	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
27	acc-4	T27E9.9	n/a	chrIII 13,482,337	C. elegans ACC-4 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
28	B0207.1	B0207.1	n/a	chrI 5,966,138	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR000387 (Protein-tyrosine phosphatase), IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000005 (Helix-turn-helix, AraC type), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000694 (Proline-rich region), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
29	srz-1	F14F8.3	n/a	chrV 16,676,674	srz-1 encodes a predicted seven-pass G protein-coupled receptor; as loss of srz-1 activity via large-scale RNAi screens results in no obvious abnormalities, the precise role of SRZ-1 in C. elegans development and/or behavior is not yet known.
30	ZK1290.10	ZK1290.10	n/a	chrII 7,552,859	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR003582 (Metridin-like ShK toxin)
31	fbxa-213	Y37H2C.3	n/a	chrV 18,268,033	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
32	T08B6.5	T08B6.5	n/a	chrIV 4,890,263	contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domains IPR012677 (Nucleotide-binding, alpha-beta plait), IPR000504 (RNA recognition motif, RNP-1)
33	clec-216	F26D11.5	n/a	chrV 7,952,270	C. elegans CLEC-216 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR001304 (C-type lectin)
34	T28F3.5	T28F3.5	n/a	chrIV 17,297,711	contains similarity to Pfam domains PF01039 (Carboxyl transferase domain) , PF02786 (Carbamoyl-phosphate synthase L chain, ATP binding domain) , PF02785 (Biotin carboxylase C-terminal domain) , PF00364 (Biotin-requiring enzyme) , PF00289 (Carbamoyl-phosphate synthase L chain, N-terminal domain) contains similarity to Interpro domains IPR000022 (Carboxyl transferase), IPR005481 (Carbamoyl phosphate synthase, large subunit, N-terminal), IPR000089 (Biotin/lipoyl attachment), IPR016185 (PreATP-grasp-like fold), IPR011761 (ATP-grasp fold), IPR005482 (Biotin carboxylase, C-terminal), IPR011053 (Single hybrid motif), IPR005479 (Carbamoyl phosphate synthetase, large subunit, ATP-binding), IPR013815 (ATP-grasp fold, subdomain 1), IPR011764 (Biotin carboxylation region), IPR013816 (ATP-grasp fold, subdomain 2), IPR011763 (Acetyl-coenzyme A carboxyltransferase, C-terminal), IPR013817 (Pre-ATP-grasp fold), IPR011054 (Rudiment single hybrid motif)
35	T22F3.8	T22F3.8	n/a	chrV 3,603,747	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
36	Y56A3A.9	Y56A3A.9	n/a	chrIII 11,884,269	contains similarity to Interpro domains IPR015706 (RNA-directed DNA polymerase (reverse transcriptase), related), IPR000694 (Proline-rich region)
37	C11E4.4	C11E4.4	n/a	chrX 9,594,806	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
38	T27E7.4	T27E7.4	n/a	chrIV 14,534,258	contains similarity to Pelomedusa subrufa NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3).; SW:NU5M_PELSU
39	Y51A2B.4	Y51A2B.4	n/a	chrV 18,387,652	contains similarity to Pfam domain PF01764 Lipase (class 3) contains similarity to Interpro domains IPR002921 (Lipase, class 3), IPR008262 (Lipase, active site)
40	Y17G7B.19	Y17G7B.19	n/a	chrII 12,110,327	contains similarity to Pfam domain PF01666 (DX module)
41	W02D7.3	W02D7.3	n/a	chrV 8,294,341
42	T01C3.5	T01C3.5	n/a	chrV 14,997,353	contains similarity to Oryza sativa Similar to gene for Pib.; TR:Q9LWW7
43	fbxa-223	ZC513.10	n/a	chrV 8,064,176	fbxa-223 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXA-223 also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
44	C35A11.2	C35A11.2	n/a	chrV 5,387,617
45	K02H8.1	K02H8.1	n/a	chrX 17,004,963	K02H8.1 encodes, by alternative splicing, two isoforms of a putative MUSCLEBLIND-type mRNA splicing regulator required in adults for normal muscle dense body organization, locomotion, and vulval morphogenesis; K02H8.1 is orthologous to Drosophila MBL and human MBNL1 (OMIM:606516), MBNL2 (OMIM:607327), and MBNL3 (OMIM:300413); K02H8.1 is transcribed in larvae and adults; K02H8.1(RNAi) animals show protruding vulvae, progressive uncoordination, and disordered dense bodies; while K02H8.1 is required in adults, it is dispensable in larvae, perhaps reflecting a progressive muscle dystrophy in K02H8.1(RNAi) animals.
46	F31B9.2	F31B9.2	n/a	chrX 15,919,200	contains similarity to Mus musculus Radixin (ESP10).; SW:RADI_MOUSE
47	C43F9.5	C43F9.5	n/a	chrIV 10,590,044	contains similarity to Interpro domain IPR006150 (Cysteine-rich repeat)
48	F41D3.6	F41D3.6	n/a	chrI 12,265,384	contains similarity to Pfam domain PF01531 Glycosyl transferase family 11 contains similarity to Interpro domain IPR002516 (Glycosyl transferase, family 11)
49	F46B6.10	F46B6.10	n/a	chrV 9,801,717	contains similarity to Homo sapiens Hypothetical protein; TR:Q96QJ8
50	C30B5.5	C30B5.5	n/a	chrII 6,204,855	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR013806 (Kringle-like fold), IPR000276 (GPCR, rhodopsin-like)