UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C08F11.12	C08F11.12	9e-65	chrIV 13,651,230	contains similarity to Pfam domain PF07403 Protein of unknown function (DUF1505) contains similarity to Interpro domain IPR009981 (Protein of unknown function DUF1505)
2	ZK813.2	ZK813.2	n/a	chrX 3,444,031
3	Y45F10C.2	Y45F10C.2	2e-64	chrIV 13,662,361	contains similarity to Pfam domain PF07403 Protein of unknown function (DUF1505) contains similarity to Interpro domain IPR009981 (Protein of unknown function DUF1505)
4	C44B7.5	C44B7.5	n/a	chrII 6,871,922	contains similarity to Interpro domain IPR005018 (DOMON related)
5	ZK813.3	ZK813.3	n/a	chrX 3,442,136	contains similarity to Homo sapiens G patch domain containing 8; ENSEMBL:ENSP00000335486
6	Y62H9A.5	Y62H9A.5	n/a	chrX 11,882,452	contains similarity to Oceanobacillus iheyensis Hypothetical protein.; TR:Q8ERS5
7	F48E3.4	F48E3.4	n/a	chrX 7,494,618	contains similarity to Interpro domains IPR001314 (Peptidase S1A, chymotrypsin), IPR001254 (Peptidase S1 and S6, chymotrypsin/Hap), IPR009003 (Peptidase, trypsin-like serine and cysteine)
8	K07A1.6	K07A1.6	n/a	chrI 9,592,533	K07A1.6 encodes a putative secreted TIL-domain protease inhibitor paralogous to SWM-1, ISL-1, and the products of 11 other C. elegans genes; K07A1.6 and its relatives are collectively similar to other TIL-domain protease inhibitors from nematodes, insects, and vertebrates; K07A1.6 has no obvious function in mass RNAi assays.
9	C10G8.4	C10G8.4	n/a	chrV 5,312,109	C10G8.4 encodes a putative secreted TIL-domain protease inhibitor paralogous to SWM-1, ISL-1, and the products of 11 other C. elegans genes; C10G8.4 and its relatives are collectively similar to other TIL-domain protease inhibitors from nematodes, insects, and vertebrates; C10G8.4 has no obvious function in mass RNAi assays.
10	C08F11.11	C08F11.11	0.000000000000005	chrIV 13,647,063	contains similarity to Pfam domain PF07403 Protein of unknown function (DUF1505) contains similarity to Interpro domain IPR009981 (Protein of unknown function DUF1505)
11	D1054.10	D1054.10	n/a	chrV 10,792,403	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IIV3
12	C49F5.7	C49F5.7	n/a	chrX 11,995,234	contains similarity to Homo sapiens Similar to PDZ domain proteins; ENSEMBL:ENSP00000298474
13	ZC395.5	ZC395.5	n/a	chrIII 5,268,152
14	cut-1	C47G2.1	n/a	chrII 11,270,278	cut-1 encodes a component of cuticlin, an insoluble residue of the nematode cuticle required for alae formation and radial shrinking during dauer differentiation; expressed specifically in the cuticle of dauer larvae and is secreted by the seam cells.
15	W02D9.6	W02D9.6	n/a	chrI 12,560,492	contains similarity to Homo sapiens similar to KIAA1107 protein; ENSEMBL:ENSP00000176186
16	C35B1.4	C35B1.4	n/a	chrIV 4,079,997
17	F55B11.2	F55B11.2	n/a	chrIV 14,422,746	contains similarity to Xenopus laevis Similar to LGN protein.; TR:Q8AVU7
18	vit-5	C04F6.1	n/a	chrX 3,406,006	vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent; by homology, VIT-5 is predicted to function as a lipid transport protein; loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth; VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes.
19	F54F7.3	F54F7.3	n/a	chrX 11,849,694	contains similarity to Amsacta moorei entomopoxvirus AMV135.; TR:Q9EMR4
20	cpg-3	R06C7.4	n/a	chrI 7,245,503	cgp-3 encodes a putatively secreted protein with an N-terminal low-complexity domain containing 15 potential chondroitin attachment sites, and a C-terminal EGF-like region; cpg-3 mRNA is enriched in oogenesis, but CPG-3 has no obvious function in mass RNAi assays.
21	hsp-12.6	F38E11.2	n/a	chrIV 9,446,611	hsp-12.6 encodes a small heat-shock protein with very short N- and C-terminal domains flanking its central region of similarity to alpha-crystallins; HSP-12.6 is required in vivo for normal lifespan; HSP-12.6 is predominantly and ubiquitously expressed in L1 larvae without any obvious induction by stressors; but, in adult hermaphrodites, at least one HSP-12 is also expressed in spermatids (and perhaps spermatocytes), as well as in some vulval cells; moreover, hsp-12.6 is upregulated in 6- and 10-day-old daf-2 mutants, and this upregulation is highly reproducible (like that of five other genes, vit-2, vit-5, fat-3, nid-1, and mtl-1), strongly suggesting that hsp-12.6's expression may contribute to prolonged lifespan in dauer larvae; the hsp-12.6 promoter is predicted to have both DAF-16 and HSF-1 binding sites; hsp-12.6(RNAi) animals are shorter-lived than normal; recombinant HSP-12.6 is monomeric, and lacks molecular chaperone activity in vitro; hsp-12.6 induction requires DAF-16 and HSP-1, but not SMK-1.
22	oma-2	ZC513.6	n/a	chrV 8,030,304	The oma-2 gene encodes a zinc finger protein of the TIS11 finger type that is paralogous to OMA-1; while either oma-1 or oma-2 individually have no obvious mutant phenotype, a normal copy of at least one of these genes is required for oocyte maturation.
23	vit-1	K09F5.2	n/a	chrX 7,730,476	C. elegans VIT-1 protein; contains similarity to Pfam domains PF00094 (von Willebrand factor type D domain) , PF09172 (Domain of unknown function (DUF1943)) , PF01347 (Lipoprotein amino terminal region) contains similarity to Interpro domains IPR015819 (Lipid transport protein, beta-sheet shell), IPR011030 (Vitellinogen, superhelical), IPR015818 (Vitellinogen, open beta-sheet, subdomain 2), IPR001747 (Lipid transport protein, N-terminal), IPR015816 (Vitellinogen, beta-sheet N-terminal), IPR001846 (von Willebrand factor, type D), IPR015255 (Vitellinogen, open beta-sheet)
24	col-2	W01B6.7	n/a	chrIV 10,084,918	col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals.
25	col-158	D2023.7	n/a	chrV 11,830,378	C. elegans COL-158 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
26	F53H4.2	F53H4.2	n/a	chrX 15,857,486	contains similarity to Interpro domains IPR001220 (Legume lectin, beta domain), IPR000209 (Serine proteases, subtilase family)
27	puf-5	F54C9.8	n/a	chrII 8,576,562	C. elegans PUF-5 protein; contains similarity to Pfam domain PF00806 Pumilio-family RNA binding repeat contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR001313 (Pumilio RNA-binding region), IPR016024 (Armadillo-type fold)
28	C25A8.4	C25A8.4	n/a	chrIV 7,006,427	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
29	C23G10.11	C23G10.11	n/a	chrIII 6,215,297	contains similarity to Interpro domain IPR003059 (Colicin lysis protein)
30	F46F5.14	F46F5.14	n/a	chrII 800,774	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
31	cpi-1	K08B4.6	n/a	chrIV 6,093,107	cpi-1 encodes a homolog of cysteine protease inhibitors (cystatins); cpi-1 is at least superficially dispensable for viability and gross morphology.
32	nlp-28	B0213.3	n/a	chrV 3,988,091	C. elegans NLP-28 protein ; contains similarity to Ixodes scapularis Putative secreted salivary gland peptide.; TR:Q5Q982
33	T27A10.6	T27A10.6	n/a	chrX 3,592,684	contains similarity to Interpro domain IPR006150 (Cysteine-rich repeat)
34	col-84	K12D12.3	n/a	chrII 11,869,021	C. elegans COL-84 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
35	B0513.4	B0513.4	n/a	chrIV 13,880,800	contains similarity to Ixodes scapularis Putative secreted protein.; TR:Q8MVF5
36	C28C12.2	C28C12.2	n/a	chrIV 8,499,682
37	Y62H9A.4	Y62H9A.4	n/a	chrX 11,880,601	contains similarity to Branchiostoma floridae Homeobox protein DLL homolog.; SW:HMDL_BRAFL
38	Y62H9A.6	Y62H9A.6	n/a	chrX 11,883,508	contains similarity to Brucella melitensis Hypothetical cytosolic protein BMEI0237.; TR:Q8YJ49
39	clec-91	ZK858.3	n/a	chrI 9,126,597	C. elegans CLEC-91 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002353 (Type II antifreeze protein)
40	C17G1.2	C17G1.2	n/a	chrX 9,922,096	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IJE7
41	C34C6.7	C34C6.7	n/a	chrII 8,707,892	contains similarity to Interpro domain IPR000533 (Tropomyosin)
42	clec-87	C25A1.8	n/a	chrI 10,184,962	clec-87 encodes a putatively secreted C-type lectin, paralogous to CLEC-88, C25B8.4, F26D10.12, and ZK858.3; CLEC-87 has a single chondroitin attachment site verified by mass spectrometry; CLEC-87 has no obvious function in mass RNAi assays.
43	dod-23	F49E12.2	n/a	chrII 8,398,700	C. elegans DOD-23 protein ;
44	dod-3	C24B9.9	n/a	chrV 2,730,844	C. elegans DOD-3 protein ;
45	W05F2.3	W05F2.3	n/a	chrI 3,368,102
46	sodh-1	K12G11.3	n/a	chrV 11,888,912	C. elegans SODH-1 protein; contains similarity to Pfam domains PF00107 (Zinc-binding dehydrogenase) , PF08240 (Alcohol dehydrogenase GroES-like domain) contains similarity to Interpro domains IPR013149 (Alcohol dehydrogenase, zinc-binding), IPR011032 (GroES-like), IPR013154 (Alcohol dehydrogenase GroES-like), IPR002085 (Alcohol dehydrogenase superfamily, zinc-containing), IPR016040 (NAD(P)-binding), IPR002328 (Alcohol dehydrogenase, zinc-containing, conserved site)
47	T28A11.19	T28A11.19	n/a	chrV 3,269,156	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
48	col-45	F53G12.7	n/a	chrI 116,588	col-45 encodes a cuticle collagen.
49	nspc-20	D1025.4	n/a	chrX 14,529,919	C. elegans NSPC-20 protein ;
50	F22B3.4	F22B3.4	n/a	chrIV 11,411,714	F22B3.4 encodes a putative glucosamine-fructose 6-phosphate aminotransferase, paralogous to F07A11.2, thought to catalyse the first step of the hexosamine pathway to UDP-N-acetylglucosamine or UDP-N-acetylgalactosamine; F22B3.4 transcripts are enriched during oogenesis; F22B3.4(RNAi) animals have an osmotically-sensitive embryonic lethal phenotype, presumably because of defects in chitin and eggshell synthesis.