UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C08B6.3	C08B6.3	0	chrV 10,111,050	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
2	F40F8.5	F40F8.5	n/a	chrII 11,133,818	contains similarity to Oryctolagus cuniculus Sarcoplasmic reticulum histidine-rich calcium-binding proteinsprecursor.; SW:P16230
3	T20F7.7	T20F7.7	n/a	chrX 16,879,254	contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
4	T10E9.2	T10E9.2	n/a	chrI 6,543,527
5	T04A8.6	T04A8.6	n/a	chrIII 4,692,695	T04A8.6 encodes an ortholog of S. cerevisiae NOP15 that may suppress tumorous growth in the germline; like PRO-1, -2, and -3, T04A8.6 is probably required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germline.
6	nhr-177	F16B4.1	n/a	chrV 1,611,519	C. elegans NHR-177 protein; contains similarity to Pfam domain PF00105 Zinc finger, C4 type (two domains) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
7	ugt-60	C07A9.6	n/a	chrIII 9,677,585	C. elegans UGT-60 protein; contains similarity to Pfam domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
8	F42G8.6	F42G8.6	n/a	chrIV 8,131,368	contains similarity to Pfam domains PF05237 (MoeZ/MoeB domain) , PF00581 (Rhodanese-like domain) , PF00899 (ThiF family) contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR003016 (2-oxo acid dehydrogenase, lipoyl-binding site), IPR009036 (Molybdenum cofactor biosynthesis), IPR000594 (UBA/THIF-type NAD/FAD binding fold), IPR007901 (MoeZ/MoeB), IPR016040 (NAD(P)-binding)
9	ZK1307.7	ZK1307.7	n/a	chrII 9,638,262	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
10	F26A3.7	F26A3.7	n/a	chrI 7,675,432	contains similarity to Gallus gallus Putative uncharacterized protein.; TR:Q5ZIQ9
11	str-226	C07G3.4	n/a	chrV 3,513,510	C. elegans STR-226 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
12	ZK250.9	ZK250.9	n/a	chrII 1,965,500	contains similarity to Pfam domain PF05970 Eukaryotic protein of unknown function (DUF889) contains similarity to Interpro domains IPR010285 (Protein of unknown function DUF889, eukaryote), IPR003593 (AAA+ ATPase, core), IPR006034 (Asparaginase/glutaminase)
13	R186.3	R186.3	n/a	chrV 12,966,597	contains similarity to Interpro domains IPR006687 (GTP-binding protein SAR1), IPR005225 (Small GTP-binding protein), IPR001806 (Ras GTPase), IPR006688 (ADP-ribosylation factor), IPR003593 (AAA+ ATPase, core)
14	C56A3.5	C56A3.5	n/a	chrV 13,552,624	contains similarity to Ureaplasma parvum Hypothetical protein UU346.; TR:Q9PQE5
15	C07D8.6	C07D8.6	n/a	chrX 7,342,092	contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domain IPR001395 (Aldo/keto reductase)
16	C09G9.2	C09G9.2	n/a	chrIV 8,868,853	contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
17	srbc-67	T24A6.10	n/a	chrV 3,539,627	C. elegans SRBC-67 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
18	tag-235	M03C11.4	n/a	chrIII 10,406,358	C. elegans TAG-235 protein; contains similarity to Interpro domain IPR016181 (Acyl-CoA N-acyltransferase)
19	R05D3.2	R05D3.2	n/a	chrIII 8,373,629	R05D3.2 is orthologous to the human gene UNKNOWN (PROTEIN FOR MGC:16889) (C7orf2; OMIM:605522), which when mutated leads to disease.
20	lap-1	ZK353.6	n/a	chrIII 8,400,522	The lap-1 gene encodes a homolog of the zinc metalloprotease leucine aminopeptidase LAP that is predicted to be mitochondrial.
21	C27C12.1	C27C12.1	n/a	chrX 14,853,081	contains similarity to Homo sapiens 10 kDa protein; VG:OTTHUMP00000170593
22	C35A5.3	C35A5.3	n/a	chrV 10,500,362	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
23	R17.2	R17.2	n/a	chrIII 10,842,361	contains similarity to Pfam domain PF03372 Endonuclease/Exonuclease/phosphatase family contains similarity to Interpro domain IPR005135 (Endonuclease/exonuclease/phosphatase)
24	F55H12.2	F55H12.2	n/a	chrI 8,868,112	contains similarity to Interpro domain IPR000242 (Tyrosine specific protein phosphatase)
25	F55G1.9	F55G1.9	n/a	chrIV 7,476,741	contains similarity to Pfam domain PF03807 NADP oxidoreductase coenzyme F420-dependent contains similarity to Interpro domains IPR004455 (NADP oxidoreductase, coenzyme F420-dependent), IPR000304 (Delta 1-pyrroline-5-carboxylate reductase), IPR016040 (NAD(P)-binding)
26	B0280.9	B0280.9	n/a	chrIII 7,121,829	contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR001680 (WD40 repeat), IPR011046 (WD40 repeat-like), IPR015943 (WD40/YVTN repeat-like)
27	B0035.15	B0035.15	n/a	chrIV 11,297,591	contains similarity to Saccharomyces cerevisiae Mlp proteins restrict telomere length by influencing the Rif1-Tel1 pathway of telomerase regulation; also involved in the translocation of macromolecules between the nucleoplasm and the NPC; SGD:YKR095W
28	orc-2	F59E10.1	n/a	chrII 10,875,816	C. elegans ORC-2 protein; contains similarity to Pfam domain PF04084 Origin recognition complex subunit 2 contains similarity to Interpro domain IPR007220 (Origin recognition complex subunit 2)
29	str-223	F49C5.6	n/a	chrII 12,564,977	C. elegans STR-223 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
30	mog-5	EEED8.5	n/a	chrII 5,402,615	The mog-5 gene encodes a DEAH helicase orthologous to the Drosophila CG8241, the human HRH1, and the S. cerevisiae PRP22 proteins.
31	W02B12.10	W02B12.10	n/a	chrII 11,472,796	contains similarity to Pfam domain PF02390 Putative methyltransferase contains similarity to Interpro domains IPR004395 (Conserved hypothetical protein CHP00091), IPR003358 (Putative methyltransferase)
32	F56D1.1	F56D1.1	n/a	chrII 5,479,410	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR007087 (Zinc finger, C2H2-type)
33	F19F10.9	F19F10.9	n/a	chrV 7,573,793	The F19F10.9 gene encodes a homolog of the human SART1 gene, which encodes a protein recognised by IgE that may be involved in atopic disease.
34	B0001.5	B0001.5	n/a	chrIV 12,142,216	contains similarity to Saccharomyces cerevisiae Gtpase-activating protein activity toward the essential bud-site assembly GTPase Cdc42; SGD:YPL115C
35	T02C12.3	T02C12.3	n/a	chrIII 4,023,867	contains similarity to Aedes aegypti Putative uncharacterized protein.; TR:Q16W48
36	R05G6.4	R05G6.4	n/a	chrIV 7,513,829	contains similarity to Interpro domains IPR003613 (U box), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016818 (Nitric oxide synthase-interacting)
37	F09E5.12	F09E5.12	n/a	chrII 5,368,494	contains similarity to Pfam domain PF05001 RNA polymerase Rpb1 C-terminal repeat
38	tag-182	C16A3.7	n/a	chrIII 6,377,219	C. elegans TAG-182 protein; contains similarity to Pfam domains PF01422 (NF-X1 type zinc finger) (9), PF01424 (R3H domain) contains similarity to Interpro domains IPR000967 (Zinc finger, NF-X1-type), IPR001841 (Zinc finger, RING-type), IPR001374 (Single-stranded nucleic acid binding R3H), IPR013083 (Zinc finger, RING/FYVE/PHD-type)
39	gly-20	C03E10.4	n/a	chrV 11,284,282	gly-20 is orthologous to the human gene MANNOSYL (ALPHA-1,6-)-GLYCOPROTEIN BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE (MGAT2; OMIM:602616), which when mutated leads to carbohydrate-deficient glycoprotein syndrome, type II.
40	gex-3	F28D1.10	n/a	chrIV 12,406,527	The gex-3 gene encodes a homolog of NAP1/NCKAP1, a mammalian protein ligand of the small GTPase Rac1, and of Drosophila HEM2/NAP1/KETTE; gex-3 is required for tissue morphogenesis and cell migrations; in gex-3 mutants, cells differentiate properly but fail to become organized.
41	Y51B9A.5	Y51B9A.5	n/a	chrII 9,404,343	contains similarity to Mus musculus Laminin gamma-1 chain precursor (Laminin B2 chain).; SW:LMG1_MOUSE
42	tag-345	F55F8.5	n/a	chrI 5,656,990	C. elegans TAG-345 protein; contains similarity to Pfam domains PF08154 (NLE (NUC135) domain) , PF00400 (WD domain, G-beta repeat) (4)contains similarity to Interpro domains IPR012972 (NLE), IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
43	gip-2	C45G3.3	n/a	chrI 9,227,490	gip-2 encodes a member of the Biotin/lipoate A/B protein ligase family.
44	F53F4.11	F53F4.11	n/a	chrV 13,623,395	contains similarity to Interpro domains IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR002143 (Ribosomal protein L1), IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich)
45	R74.7	R74.7	n/a	chrIII 4,205,094	contains similarity to Pfam domain PF01728 FtsJ-like methyltransferase contains similarity to Interpro domains IPR015507 (Ribosomal RNA methyltransferase J), IPR002877 (Ribosomal RNA methyltransferase RrmJ/FtsJ)
46	cul-4	F45E12.3	n/a	chrII 7,303,864	cul-4 encodes one of six C. elegans cullin proteins; CUL-4 activity is essential for negative regulation of DNA-replication licensing and thus, for maintenance of genome stability; in regulating DNA replication, CUL-4 functions as part of a CUL-4/DDB-1 ubiquitin ligase complex that degrades the replication licensing factor CDT-1 and indirectly promotes nuclear export of the replication licensing factor CDC-6 by negatively regulating the levels of the CKI-1 CDK inhibitor; cul-4 mRNA is expressed throughout development with highest levels seen in embryos and lower levels seen in larvae and adults; maternal cul-4 mRNA is present in early embryos and larval and adult mRNA is most notably present in the intestine and germ line.
47	npp-15	C29E4.4	n/a	chrIII 7,930,950	C. elegans NPP-15 protein; contains similarity to Pfam domains PF08801 (Nup133 N terminal like) , PF04044 (Nup133 nucleoporin) contains similarity to Interpro domains IPR014908 (Nup133, N-terminal), IPR015943 (WD40/YVTN repeat-like), IPR007187 (Nucleoporin, Nup133-like, C-terminal)
48	sas-4	F10E9.8	n/a	chrIII 8,316,386	sas-4 encodes a predicted coiled-coil protein and centriole component recruited to the centrosome once per cell cycle at the time of organelle duplication and is required for centriole duplication and spindle assembly, levels dictate centrosome size, and also affects germ cell proliferation and locomotion; colocalizes with gamma-tubulin to centrosomes both in sperm and in the syncitial part of the gonad.
49	eri-3	W09B6.3	n/a	chrII 1,125,668	C. elegans ERI-3 protein ;
50	C49C3.5	C49C3.5	n/a	chrIV 17,329,906	contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR012287 (Homeodomain-related), IPR001356 (Homeobox), IPR009057 (Homeodomain-like)