UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	amt-1	C05E11.4	0	chrX 4,572,644	amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane; as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known.
2	W08A12.4	W08A12.4	n/a	chrV 3,675,610	contains similarity to Paramecium tetraurelia Chromosome undetermined scaffold_94, whole genome shotgun sequence.; TR:A0EFX6
3	B0284.1	B0284.1	n/a	chrIII 4,377,822	contains similarity to Interpro domain IPR016027 (Nucleic acid-binding, OB-fold-like)
4	C13A2.4	C13A2.4	n/a	chrV 7,279,942	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
5	zig-3	C14F5.2	n/a	chrX 7,931,218	zig-3 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-3::gfp reporter fusion is expressed in the PVT, AIM, and ASI neurons, as well as in the vulva and weakly in the body wall muscle.
6	ugt-18	ZC443.5	n/a	chrV 12,821,489	C. elegans UGT-18 protein; contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) contains similarity to Interpro domains IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)
7	F07C4.10	F07C4.10	n/a	chrV 7,639,387	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
8	F32G8.3	F32G8.3	n/a	chrV 10,554,899	contains similarity to Homo sapiens Splice isoform Long of Q13595 Transformer-2 protein homolog; ENSEMBL:ENSP00000297071
9	bra-2	F23H11.1	n/a	chrIII 911,744	The bra-2 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1), paralogous to bra-1, that may act upon the SMA-6 TGF-beta signalling pathway
10	T23G7.3	T23G7.3	n/a	chrII 9,166,799	contains similarity to Pfam domain PF01585 G-patch domain contains similarity to Interpro domain IPR000467 (D111/G-patch)
11	C05E11.6	C05E11.6	n/a	chrX 4,562,490	contains similarity to Interpro domain IPR001166 (Crustacean neurohormone)
12	spp-20	K04A8.8	n/a	chrV 6,557,433	C. elegans SPP-20 protein; contains similarity to Pfam domain PF05184 Saposin-like type B, region 1 contains similarity to Interpro domains IPR011001 (Saposin-like), IPR007856 (Saposin-like type B, 1), IPR008139 (Saposin B)
13	tsp-5	Y45F10B.1	n/a	chrIV 13,591,144	C. elegans TSP-5 protein; contains similarity to Pfam domain PF00335 Tetraspanin family contains similarity to Interpro domains IPR000301 (CD9/CD37/CD63 antigen), IPR008952 (Tetraspanin)
14	W03F11.1	W03F11.1	n/a	chrI 2,220,892	W03F11.1 encodes a protein with three chitin-binding peritrophin-A domains; like CEJ-1 and CPG-2, W03F11.1 may participate in eggshell synthesis and early embryonic development; W03F11.1 is required for fertility in mass RNAi assays; W03F11.1's multiple peritrophin-A domains might enable mechanical cross-linking of chitin.
15	C13A2.3	C13A2.3	n/a	chrV 7,283,523	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
16	C05D11.8	C05D11.8	n/a	chrIII 6,424,823	contains similarity to Homo sapiens Isoform 2 of UPF0518 protein C11orf56; ENSEMBL:ENSP00000265978
17	R09D1.1	R09D1.1	n/a	chrII 9,442,815	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
18	srab-17	T11A5.2	n/a	chrV 9,867,491	C. elegans SRAB-17 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
19	nlp-7	F18E9.2	n/a	chrX 8,593,444	C. elegans NLP-7 protein ;
20	Y6E2A.4	Y6E2A.4	n/a	chrV 15,713,920	contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core), IPR002219 (Protein kinase C, phorbol ester/diacylglycerol binding)
21	W02D7.8	W02D7.8	n/a	chrV 8,305,769
22	C17H1.2	C17H1.2	n/a	chrI 13,102,913	contains similarity to Apple stem grooving virus Genome polyprotein [Contains: RNA replicase (EC 2.7.7.48); Helicase;sCoat protein].; SW:POLR_ASGVP
23	F58E6.4	F58E6.4	n/a	chrV 9,750,160	contains similarity to Homo sapiens Protein PRO1073/PRO2853; ENSEMBL:ENSP00000332769
24	F08H9.3	F08H9.3	n/a	chrV 14,462,384	F08H9.3 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the larval pharynx and the anterior adult pharynx), and its expression is not strongly induced by heat shock; however, F08H9.3 expression is increased by heat shock (with adult expression in the full pharynx) and probably aids heat shock resistance, since F08H9.3(RNAi) animals have sensitivity to heat shock that is sporadically higher than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP.
25	fbxa-164	C08E3.7	n/a	chrII 1,613,450	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
26	ocr-3	T10B10.7	n/a	chrX 15,171,101	ocr-3 encodes a predicted TRPV channel (transient receptor potential cation channel, subfamily V) containing six membrane-spanning regions, cytoplasmic ankyrin repeats, and a long, unconserved cytoplasmic tail that is related to the mammalian TRPV1 cation channel (OMIM:602076) activated by capsaicin and other noxious stimuli; although the precise role of OCR-3 in C. elegans development and/or behavior is not yet known, OCR-3 expression is detected solely in the rectal gland cells and occasionally the glial socket cells of the head, suggesting that OCR-3 may function in sensory signal transduction in these cell types.
27	tyr-3	F21C3.2	n/a	chrI 7,276,425	C. elegans TYR-3 protein; contains similarity to Pfam domains PF00264 (Common central domain of tyrosinase) , PF01549 (ShK domain-like) (4)contains similarity to Interpro domains IPR008922 (Di-copper centre-containing), IPR002227 (Tyrosinase), IPR003582 (Metridin-like ShK toxin)
28	C06G3.3	C06G3.3	n/a	chrIV 7,036,272
29	tag-40	R02C2.3	n/a	chrV 249,183	C. elegans TAG-40 protein; contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
30	T14B4.8	T14B4.8	n/a	chrII 6,720,967
31	C25G4.2	C25G4.2	n/a	chrIV 12,443,605	contains similarity to Pfam domain PF03959 Serine hydrolase (FSH1) contains similarity to Interpro domain IPR005645 (Protein of unknown function DUF341)
32	F59F5.4	F59F5.4	n/a	chrX 10,543,156	contains similarity to Brugia malayi Hypothetical protein (Fragment).; TR:P90701
33	Y38H6C.19	Y38H6C.19	n/a	chrV 20,548,064	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
34	F53F4.4	F53F4.4	n/a	chrV 13,596,162	contains similarity to Candida albicans Chitinase 3 precursor (EC 3.2.1.14).; SW:CHI3_CANAL
35	C47F8.7	C47F8.7	n/a	chrI 12,326,720
36	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
37	cex-1	F56D1.6	n/a	chrII 5,448,034	C. elegans CEX-1 protein; contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR011992 (EF-Hand type), IPR002048 (Calcium-binding EF-hand)
38	ZC581.3	ZC581.3	n/a	chrI 6,653,325	contains similarity to Interpro domain IPR011046 (WD40 repeat-like)
39	F58H7.7	F58H7.7	n/a	chrIV 911,281	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
40	F48G7.2	F48G7.2	n/a	chrV 637,034
41	H12D21.4	H12D21.4	n/a	chrV 14,892,420	contains similarity to Pfam domain PF00581 Rhodanese-like domain contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR001307 (Thiosulphate sulphurtransferase, conserved site)
42	T19D12.3	T19D12.3	n/a	chrII 6,660,581
43	dhs-26	ZK816.5	n/a	chrX 3,361,621	dhs-26 encodes a short-chain dehydrogenase predicted to be mitochondrial.
44	F18E9.6	F18E9.6	n/a	chrX 8,576,043	contains similarity to Pfam domain PF01744 GLTT repeat (6 copies) contains similarity to Interpro domain IPR008164 (Repeat of unknown function XGLTT)
45	C14A6.2	C14A6.2	n/a	chrV 18,151,568	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR001991 (Sodium:dicarboxylate symporter), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
46	srbc-20	C45H4.11	n/a	chrV 2,147,858	C. elegans SRBC-20 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
47	col-55	T05E7.2	n/a	chrI 6,199,669	C. elegans COL-55 protein; contains similarity to Pfam domain PF01484 Nematode cuticle collagen N-terminal domain contains similarity to Interpro domain IPR002486 (Nematode cuticle collagen, N-terminal)
48	ttr-5	C40H1.5	n/a	chrIII 9,330,525	C40H1.5 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of C40H1.5 belongs to a family of apparently nematode-specific proteins whose function is not yet known.
49	skr-5	F47H4.10	n/a	chrV 17,348,283	The skr-5 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-5(RNAi) animals are at least superficially normal.
50	F07G11.1	F07G11.1	n/a	chrV 7,308,454	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)