UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C02F5.5	C02F5.5	2.9999999999999997e-87	chrIII 8,236,454
2	nspd-4	T23B7.1	n/a	chrII 4,842,734	C. elegans NSPD-4 protein; contains similarity to Pfam domain PF05611 Caenorhabditis elegans protein of unknown function (DUF780) contains similarity to Interpro domain IPR008498 (Protein of unknown function DUF780, Caenorhabditis species)
3	F21H7.5	F21H7.5	n/a	chrV 16,238,153	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
4	ZK1251.1	ZK1251.1	n/a	chrIV 9,683,245	contains similarity to Pfam domains PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone) , PF00125 (Core histone H2A/H2B/H3/H4) contains similarity to Interpro domains IPR009072 (Histone-fold), IPR007125 (Histone core), IPR002119 (Histone H2A), IPR003958 (Transcription factor CBF/NF-Y/archaeal histone)
5	ssp-31	ZK1225.6	n/a	chrI 13,219,303	C. elegans SSP-31 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
6	F08H9.2	F08H9.2	n/a	chrV 14,460,857	contains similarity to Interpro domain IPR004064 (EDG-6 sphingosine 1-phosphate receptor)
7	ZK938.1	ZK938.1	n/a	chrII 9,830,005	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
8	T08B2.12	T08B2.12	n/a	chrI 6,231,810	contains similarity to Equine herpesvirus 1 Glycoprotein X precursor.; SW:Q6S6W0
9	R10E9.2	R10E9.2	n/a	chrIII 3,963,390	contains similarity to Arabidopsis thaliana Hypothetical protein (At2g34570).; TR:Q8GWS9
10	C04F12.7	C04F12.7	n/a	chrI 9,696,226	contains similarity to Legionella pneumophila CITA.; TR:O54543
11	F32B5.4	F32B5.4	n/a	chrI 2,692,274
12	C25A8.1	C25A8.1	n/a	chrIV 7,011,175
13	msp-74	F09C12.7	n/a	chrII 5,115,201	msp-74 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
14	Y106G6A.4	Y106G6A.4	n/a	chrI 9,931,412	contains similarity to Homo sapiens Splice isoform 3 of Q99963 SH3-containing GRB2-like protein 3; ENSEMBL:ENSP00000321799
15	C45G9.4	C45G9.4	n/a	chrIII 5,063,224	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR005819 (Histone H5)
16	sss-1	F32B6.5	n/a	chrIV 9,893,216	C. elegans SSS-1 protein ;
17	ssq-4	T28H11.1	n/a	chrIV 5,017,101	C. elegans SSQ-4 protein; contains similarity to Interpro domains IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR002952 (Eggshell protein), IPR000817 (Prion protein), IPR000103 (Pyridine nucleotide-disulphide oxidoreductase, class-II), IPR000158 (Cell division protein FtsZ, N-terminal), IPR013286 (Annexin, type VII)
18	F36A2.10	F36A2.10	n/a	chrI 8,819,797	contains similarity to Interpro domains IPR000164 (Histone H3), IPR005819 (Histone H5)
19	F36D1.4	F36D1.4	n/a	chrI 11,272,019	contains similarity to Homo sapiens Splice isoform C-alpha of O95644 Nuclear factor of activated T-cells, cytoplasmic 1; SW:O95644
20	nspa-9	C40H5.1	n/a	chrX 11,739,026	C. elegans NSPA-9 protein ;
21	F36A4.3	F36A4.3	n/a	chrIV 4,269,952	contains similarity to Pfam domain PF05912 Caenorhabditis elegans protein of unknown function (DUF870) contains similarity to Interpro domain IPR008588 (Protein of unknown function DUF870, Caenorhabditis species)
22	C24D10.2	C24D10.2	n/a	chrIV 5,163,991	contains similarity to Interpro domain IPR000079 (High mobility group protein HMG14 and HMG17)
23	F37A8.1	F37A8.1	n/a	chrIII 3,928,769	contains similarity to Rattus norvegicus Myotonic dystrophy kinase-related Cdc42-binding kinase MRCK-beta.; TR:O54875
24	E03H12.5	E03H12.5	n/a	chrIV 4,977,628	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR005819 (Histone H5), IPR001946 (Adrenergic receptor, alpha-2A)
25	K06A5.2	K06A5.2	n/a	chrI 6,468,758	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
26	C14C11.1	C14C11.1	n/a	chrV 5,664,396
27	C04G2.9	C04G2.9	n/a	chrIV 10,113,525	contains similarity to Ascaris suum MFP2b.; TR:Q7YXJ9
28	C05C12.5	C05C12.5	n/a	chrIV 11,260,772	contains similarity to Homo sapiens cDNA FLJ10106 fis, clone HEMBA1002569, highly similar to Homo sapiens protein associated with Myc mRNA (Fragment); ENSEMBL:ENSP00000353197
29	T23B3.5	T23B3.5	n/a	chrI 6,705,973	contains similarity to Interpro domains IPR003993 (Treacher Collins syndrome, treacle), IPR015425 (Actin-binding FH2), IPR000694 (Proline-rich region), IPR005819 (Histone H5)
30	C39H7.1	C39H7.1	n/a	chrIV 5,632,623	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
31	clec-251	F11D11.8	n/a	chrV 18,746,563	C. elegans CLEC-251 protein; contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domains IPR006583 (CW), IPR016187 (C-type lectin fold)
32	K01H12.4	K01H12.4	n/a	chrIV 9,714,029	contains similarity to Simian T-lymphotropic virus 1 Rex p27 protein (Fragment).; TR:O12387
33	gsp-4	T03F1.5	n/a	chrI 3,838,957	C. elegans GSP-4 protein; contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
34	T27E7.1	T27E7.1	n/a	chrIV 14,520,345	contains similarity to Bos taurus Annexin A7 (Annexin VII) (Synexin) (Fragment).; SW:ANX7_BOVIN
35	Y37D8A.5	Y37D8A.5	n/a	chrIII 12,854,726	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
36	gst-9	R05F9.5	n/a	chrII 4,892,523	gst-9 encodes a predicted glutathione S-transferase; by homology, GST-9 is predicted to play a role in the detoxification of environmental toxins and xenobiotics by transferring glutathione to reactive electrophilic compounds; however, as loss of gst-9 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of GST-9 in C. elegans development and/or behavior is not yet known.
37	rmd-4	F36H12.11	n/a	chrIV 5,256,341	C. elegans RMD-4 protein; contains similarity to Interpro domain IPR011990 (Tetratricopeptide-like helical)
38	ZC168.6	ZC168.6	n/a	chrIV 10,738,430	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
39	ZK484.5	ZK484.5	n/a	chrI 6,087,568
40	C43G2.3	C43G2.3	n/a	chrIV 6,578,783
41	K05F1.3	K05F1.3	n/a	chrII 5,795,290	contains similarity to Pfam domains PF08028 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02770 (Acyl-CoA dehydrogenase, middle domain) , PF00441 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02771 (Acyl-CoA dehydrogenase, N-terminal domain) contains similarity to Interpro domains IPR013107 (Acyl-CoA dehydrogenase, type 2, C-terminal), IPR006090 (Acyl-CoA oxidase/dehydrogenase, type 1), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR006091 (Acyl-CoA dehydrogenase/oxidase, central region), IPR006089 (Acyl-CoA dehydrogenase, conserved site), IPR013764 (Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, middle and N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR006092 (Acyl-CoA dehydrogenase, N-terminal)
42	ssp-9	E03H12.10	n/a	chrIV 4,994,521	C. elegans SSP-9 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
43	ZC262.1	ZC262.1	n/a	chrIII 8,341,087
44	ssq-2	T28H11.5	n/a	chrIV 4,996,828	C. elegans SSQ-2 protein; contains similarity to Interpro domains IPR003982 (Leukotriene B4 type 2 receptor), IPR001399 (VP6 blue-tongue virus inner capsid protein)
45	F58E6.5	F58E6.5	n/a	chrV 9,753,985	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
46	mab-9	T27A1.6	n/a	chrII 518,813	mab-9 encodes a member of the T-box family of transcriptional regulators containing a 200-amino acid T-box DNA-binding domain most similar to mouse Brachyury; mab-9 is involved in hindgut and male tail development, specifically affecting the fate of two posterior blast cells in the hindgut, B and F; in the male this results in a grossly abnormal tail lacking spicules, and renders them incapable of mating; in the hermaphrodite this results in hindgut defects; mab-9 may also be part of a network of T-box genes that includes tbx-8, tbx-9 and vab-7 and is important for the correct patterning of posterior cells in the developing embryo; mab-9 affects movement to some extent though the basis for this defect is unknown; MAB-9 localizes to the nucleus of B and F and their descendents during development.
47	Y43F8C.3	Y43F8C.3	n/a	chrV 19,618,472	contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
48	R09E10.6	R09E10.6	n/a	chrIV 10,293,542	contains similarity to Coturnix coturnix Nectinepsin.; TR:Q90351
49	ZK512.8	ZK512.8	n/a	chrIII 9,146,610	contains similarity to Saccharomyces cerevisiae CDC5 is dispensable for premeiotic DNA synthesis and recombination, but required for tripartite synaptonemal complexes, haploidization, and spores; SGD:YMR001C
50	C18G1.9	C18G1.9	n/a	chrV 4,768,777	contains similarity to Pfam domain PF01738 Dienelactone hydrolase family contains similarity to Interpro domain IPR002925 (Dienelactone hydrolase)