UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	fbxa-139	B0391.9	3e-43	chrV 15,593,604	C. elegans FBXA-139 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	str-245	F32A7.7	n/a	chrI 14,853,699	C. elegans STR-245 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001991 (Sodium:dicarboxylate symporter)
4	F26F4.6	F26F4.6	n/a	chrIII 4,892,477	contains similarity to Homo sapiens Similar to Suppressor protein SRP40; VG:OTTHUMP00000170311
5	hpr-17	F32A11.2	n/a	chrII 13,155,162	C. elegans HPR-17 protein; contains similarity to Pfam domain PF03215 Rad17 cell cycle checkpoint protein contains similarity to Interpro domains IPR004582 (Checkpoint protein Rad24), IPR003593 (AAA+ ATPase, core)
6	C49C3.7	C49C3.7	n/a	chrIV 17,333,023	contains similarity to Homo sapiens Isoform Short of CAP-Gly domain-containing linker protein 1; ENSEMBL:ENSP00000355314
7	his-60	F55G1.11	n/a	chrIV 7,487,766	his-60 encodes an H4 histone; by homology, HIS-60 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-60 expression is detected in early embryos, beginning at the 28-cell stage and continuing through the comma stage (early morphogenesis); his-60 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV.
8	T21C9.1	T21C9.1	n/a	chrV 10,577,614	contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
9	bath-35	W02A11.8	n/a	chrI 12,758,985	C. elegans BATH-35 protein; contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
10	mom-5	T23D8.1	n/a	chrI 9,967,489	mom-5 encodes one of four C. elegans members of the Frizzled (Fz) family of seven transmembrane receptors; during development, MOM-5 activity is required for asymmetric cell division in the early embryo as well as for asymmetric cell division during neuronal development; MOM-5::GFP is enriched at the posterior pole of cells prior to division and during later stages of embryogenesis, is found at the leading edges of epidermal cells during ventral enclosure; in neuroblasts, MOM-5 is required for proper subcellular distribution of DSH-2 to the cortex.
11	C47G2.4	C47G2.4	n/a	chrII 11,292,129	contains similarity to Pfam domain PF04791 LMBR1-like membrane protein contains similarity to Interpro domain IPR006876 (LMBR1-like conserved region)
12	F09E5.11	F09E5.11	n/a	chrII 5,357,780	F09E5.11 encodes a divergent ortholog of S. cerevisiae VPH2/VMA12; like VPH2, F09E5.11 may be required for vacuolar proton-translocating ATPase (V-ATPase) assembly in the endoplasmic reticulum.
13	adbp-1	VW02B12L.4	n/a	chrII 11,444,624	C. elegans ADBP-1 protein ;
14	R05F9.11	R05F9.11	n/a	chrII 4,913,028
15	K02B7.2	K02B7.2	n/a	chrII 14,692,031	contains similarity to Pfam domains PF07735 (F-box associated) , PF00646 (F-box domain) contains similarity to Interpro domains IPR001810 (Cyclin-like F-box), IPR012885 (F-box associated type 2)
16	fcd-2	Y41E3.9	n/a	chrIV 15,031,338	fcd-2 encodes an ortholog of the human gene FANCD2 (mutated in Fanconi anemia, OMIM:227646) that is strongly required for resistance to DNA interstrand crosslinking (ICL) agents, but not to ionizing radiation (IR); fcd-2 mutants are viable and dispensable for resistance to IR, meiotic recombination, and S-phase checkpoint activation, but are hypersensitive to ICL agents; like its human ortholog, FCD-2 is monoubiquitylated and recruited to chromosomal foci after ICL but not IR; transgenic expresssion of the FANCD2 gene in mutant FA-D2 cells rescues their abnormal sensitivity to mitomycin C, an agent that cross-links strands of DNA.
17	F46C5.4	F46C5.4	n/a	chrII 8,837,535
18	Y54G9A.5	Y54G9A.5	n/a	chrII 13,723,894
19	dpf-2	C27C12.7	n/a	chrX 14,834,928	C. elegans DPF-2 protein; contains similarity to Pfam domains PF00930 (Dipeptidyl peptidase IV (DPP IV) N-terminal region) , PF00326 (Prolyl oligopeptidase family) contains similarity to Interpro domains IPR001375 (Peptidase S9, prolyl oligopeptidase active site region), IPR002469 (Peptidase S9B, dipeptidylpeptidase IV N-terminal)
20	mes-4	Y2H9A.1	n/a	chrV 13,435,282	mes-4 encodes a SET domain-containing protein that also contains three plant homeodomain (PHD) fingers; MES-4 is required maternally for normal germline development, but in contrast to MES-2, -3, and -6, does not appear to be required for somatic anteroposterior patterning; in germline development, MES-4 activity is essential for regulating active chromatin states and for excluding the MES-2/MES-3/MES-6 chromatin repression complex from the autosomes; MES-4 is also required for germline silencing of repetitive transgene arrays; MES-4 localizes to autosomes, and is detectable in the distal, mitotic region of the germline, in meiotic germ cells during late pachytene, and in oocytes; MES-4 is detected in all somatic and germline nuclei of the early embryo, but by the 100-cell stage, its expression becomes restricted to the primordial germ cells, Z2 and Z3; exclusion of MES-4 from X chromosomes requires the activity of the MES-2, -3, -6 complex.
21	F09E5.9	F09E5.9	n/a	chrII 5,346,983
22	pqn-45	F56F3.1	n/a	chrIII 4,473,243	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
23	T02C12.2	T02C12.2	n/a	chrIII 4,020,894	contains similarity to Danio rerio Zgc:56295.; TR:Q7ZU76
24	fbxa-193	F59A1.9	n/a	chrV 17,654,348	C. elegans FBXA-193 protein; contains similarity to Pfam domain PF00646 F-box domain contains similarity to Interpro domains IPR001000 (Glycoside hydrolase, family 10), IPR001810 (Cyclin-like F-box)
25	mxl-2	F40G9.11	n/a	chrIII 187,571	C. elegans MXL-2 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domains IPR001092 (Basic helix-loop-helix dimerisation region bHLH), IPR011598 (Helix-loop-helix DNA-binding)
26	C04F5.8	C04F5.8	n/a	chrV 5,112,623	contains similarity to Bos taurus Similar to C04F5.8.; TR:Q0IIF4
27	T26A5.6	T26A5.6	n/a	chrIII 6,449,449	contains similarity to Interpro domain IPR001194 (DENN)
28	ani-3	Y43F8C.14	n/a	chrV 19,696,771	ani-3 encodes one of three C. elegans anillins.
29	spat-1	F57C2.6	n/a	chrII 14,531,337	spat-1 encodes a divergent ortholog of Drosophila melanogaster AURORA BOREALIS (BORA) and human BORA (OMIM:610510); SPAT-1 is specifically required for PAR protein-dependent cell-polarity; RNAi of spat-1 weakly suppresses the embryonic lethality of par-2(it5ts) at restrictive temperature.
30	bath-3	F59H6.10	n/a	chrII 2,029,895	C. elegans BATH-3 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain) , PF00917 (MATH domain) contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
31	ceh-5	C16C2.1	n/a	chrI 9,727,604	ceh-5 encodes a homeodomain protein, similar to the human VENTRAL ANTERIOR HOMEO BOX 2 gene (VAX2; OMIM:604295); CEH-5 is dispensable for viability and gross morphology.
32	C01H6.9	C01H6.9	n/a	chrI 7,231,276	C01H6.9 encodes a homolog of haploid germ cell-specific nuclear protein kinase (haspin) that specifically binds GOA-1 in yeast two-hybrid assays; C01H6.9 is expressed in PHB sensory neurons and PVT interneurons in the tail, several unidentified neurons in the head (with projections to the nose and nerve ring), and intestinal cells, with mainly nuclear localization; C01H6.9 has no obvious function or phenotype in RNAi assays, either alone or with inactivation of a close paralog (F22H10.5).
33	ZK742.2	ZK742.2	n/a	chrV 7,802,661	contains similarity to Homo sapiens Isoform 1 of Uncharacterized protein KIAA1530; ENSEMBL:ENSP00000374501
34	ZK1248.11	ZK1248.11	n/a	chrII 5,828,127	contains similarity to Xenopus laevis E3 SUMO-protein ligase NSE2 (EC 6.-.-.-) (Non-structural maintenancesof chromosomes element 2 homolog) (Non-SMC element 2 homolog).; SW:Q7ZXH2
35	str-125	T05E12.1	n/a	chrV 17,075,114	C. elegans STR-125 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
36	W06A11.2	W06A11.2	n/a	chrII 4,060,321
37	F26A1.9	F26A1.9	n/a	chrIII 4,825,812
38	M02B7.4	M02B7.4	n/a	chrIV 3,802,482	contains similarity to Pfam domain PF08660 Oligosaccharide biosynthesis protein Alg14 like contains similarity to Interpro domain IPR013969 (Oligosaccharide biosynthesis protein Alg14 like)
39	F10E9.7	F10E9.7	n/a	chrIII 8,306,002	contains similarity to Interpro domain IPR016193 (Cytidine deaminase-like)
40	K09H9.7	K09H9.7	n/a	chrI 3,151,195	contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
41	nhr-273	T12C9.1	n/a	chrII 4,436,140	C. elegans NHR-273 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
42	his-6	F45F2.13	n/a	chrV 8,534,749	his-6 encodes an H3 histone.
43	F37D6.3	F37D6.3	n/a	chrI 10,487,009	contains similarity to Interpro domain IPR002004 (Polyadenylate-binding protein/Hyperplastic disc protein)
44	C14B1.8	C14B1.8	n/a	chrIII 3,719,182	C14B1.8 encodes a coiled-coil protein.
45	abce-1	Y39E4B.1	n/a	chrIII 13,156,917	C. elegans ABCE-1 protein; contains similarity to Pfam domains PF04068 (Possible metal-binding domain in RNase L inhibitor, RLI) , PF00037 (4Fe-4S binding domain) , PF00005 (ABC transporter) (2)contains similarity to Interpro domains IPR003439 (ABC transporter-like), IPR001450 (4Fe-4S ferredoxin, iron-sulphur binding), IPR013283 (ABC transporter, ABCE), IPR007209 (Possible metal-binding region in RNase L inhibitor, RLI), IPR003593 (AAA+ ATPase, core)
46	F23D12.2	F23D12.2	n/a	chrX 14,418,796	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
47	B0564.2	B0564.2	n/a	chrIV 13,107,893	contains similarity to Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily contains similarity to Interpro domain IPR005123 (2OG-Fe(II) oxygenase)
48	C33H5.6	C33H5.6	n/a	chrIV 7,776,604	contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR000664 (Lethal(2) giant larvae protein), IPR015943 (WD40/YVTN repeat-like)
49	C36B7.4	C36B7.4	n/a	chrX 7,086,834
50	T15D6.10	T15D6.10	n/a	chrI 12,395,188	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)