UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	B0250.4	B0250.4	0	chrV 20,456,958	contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
2	F59B10.2	F59B10.2	n/a	chrII 10,508,511	contains similarity to Interpro domains IPR003993 (Treacher Collins syndrome, treacle), IPR005819 (Histone H5)
3	F35F10.10	F35F10.10	n/a	chrV 3,304,887	contains similarity to Pfam domain PF04721 Domain of unknown function (DUF750) contains similarity to Interpro domain IPR006588 (Protein of unknown function PAW)
4	nhr-152	C12D5.2	n/a	chrV 7,687,313	C. elegans NHR-152 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
5	F17A2.13	F17A2.13	n/a	chrX 12,322,252	contains similarity to Mus musculus X-linked retinitis pigmentosa GTPase regulator-interacting protein 1s(RPGR-interacting protein 1).; SW:Q9EPQ2
6	F21F8.2	F21F8.2	n/a	chrV 8,275,167	contains similarity to Pfam domain PF00026 Eukaryotic aspartyl protease contains similarity to Interpro domains IPR009007 (Peptidase aspartic, catalytic), IPR001461 (Peptidase A1)
7	C16C4.7	C16C4.7	n/a	chrII 1,859,900
8	D1086.1	D1086.1	n/a	chrV 14,099,606	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
9	T02G6.3	T02G6.3	n/a	chrI 11,814,056	contains similarity to Homo sapiens Splice isoform 2 of Q86UP2 Kinectin; ENSEMBL:ENSP00000337744
10	F43G6.2	F43G6.2	n/a	chrII 11,782,680
11	H01M10.2	H01M10.2	n/a	chrX 2,585,134	contains similarity to Interpro domain IPR006220 (Anthranilate synthase component II/delta crystallin)
12	srj-45	T03D3.6	n/a	chrV 2,836,005	C. elegans SRJ-45 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR006162 (Phosphopantetheine attachment site)
13	Y116A8C.15	Y116A8C.15	n/a	chrIV 16,996,337	contains similarity to Homo sapiens similar to KIAA1357 protein; ENSEMBL:ENSP00000258005
14	F14B8.2	F14B8.2	n/a	chrX 6,904,852
15	F46B3.15	F46B3.15	n/a	chrV 20,628,725	contains similarity to Interpro domain IPR003645 (Follistatin-like, N-terminal)
16	sru-19	T04A11.8	n/a	chrIV 12,499,445	C. elegans SRU-19 protein; contains similarity to Pfam domain PF02688 Domain of unknown function DUF215 contains similarity to Interpro domain IPR003839 (Protein of unknown function DUF215)
17	K03H6.2	K03H6.2	n/a	chrIV 1,512,894	contains similarity to Pfam domain PF01764 Lipase (class 3) contains similarity to Interpro domains IPR002921 (Lipase, class 3), IPR003659 (Plexin/semaphorin/integrin), IPR008262 (Lipase, active site), IPR016201 (Plexin-like fold)
18	srw-137	H27D07.4	n/a	chrV 2,943,264	C. elegans SRW-137 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
19	R17.3	R17.3	n/a	chrIII 10,836,977	R17.3 encodes an ortholog of human retinal pigment epithelium (RPE)-spondin (RPESP).
20	sdz-20	F53A2.2	n/a	chrIII 13,335,391	C. elegans SDZ-20 protein
21	T27F6.4	T27F6.4	n/a	chrI 12,485,310	contains similarity to Saccharomyces cerevisiae Mid-Two Like 1; SGD:YGR023W
22	M01H9.1	M01H9.1	n/a	chrIV 4,487,922	contains similarity to Pfam domain PF00085 Thioredoxin contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR013766 (Thioredoxin domain), IPR006662 (Thioredoxin-related)
23	gcy-9	ZK455.2	n/a	chrX 11,335,257	gcy-9 encodes a membrane guanylyl cyclase; gcy-9 expression is reportedly weak and variable in non-neuronal tissues.
24	srh-283	C47A10.2	n/a	chrV 17,766,031	C. elegans SRH-283 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
25	srv-36	F57G8.8	n/a	chrV 16,324,110	C. elegans SRV-36 protein ;
26	F56H6.11	F56H6.11	n/a	chrI 12,309,058	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
27	ZK795.1	ZK795.1	n/a	chrIV 12,551,089	contains similarity to Pfam domain PF03770 Inositol polyphosphate kinase contains similarity to Interpro domain IPR005522 (Inositol polyphosphate kinase)
28	Y40B1A.2	Y40B1A.2	n/a	chrI 13,348,157	contains similarity to Pfam domain PF00397 WW domain contains similarity to Interpro domains IPR002349 (WW), IPR001202 (WW/Rsp5/WWP)
29	C06E4.5	C06E4.5	n/a	chrIV 7,255,611	contains similarity to Interpro domain IPR011009 (Protein kinase-like)
30	C54G10.1	C54G10.1	n/a	chrV 14,641,219	contains similarity to Homo sapiens similar to secreted gel-forming mucin; ENSEMBL:ENSP00000328427
31	srh-167	F57G8.3	n/a	chrV 16,334,360	C. elegans SRH-167 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
32	ZK1073.1	ZK1073.1	n/a	chrX 16,126,525	contains similarity to Pfam domain PF03096 Ndr family contains similarity to Interpro domain IPR004142 (Ndr)
33	K09C6.3	K09C6.3	n/a	chrV 852,829
34	srsx-1	F40D4.5	n/a	chrV 17,177,360	C. elegans SRSX-1 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
35	F02E11.4	F02E11.4	n/a	chrII 3,276,774	contains similarity to Interpro domain IPR002625 (Smr protein/MutS2 C-terminal)
36	math-7	C16C4.12	n/a	chrII 1,885,961	C. elegans MATH-7 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
37	K09H9.4	K09H9.4	n/a	chrI 3,134,515	contains similarity to Interpro domains IPR015706 (RNA-directed DNA polymerase (reverse transcriptase), related), IPR003286 (Nematode reverse transcriptase-like)
38	asna-2	F47G3.2	n/a	chrX 2,383,478	C. elegans ASNA-2 protein; contains similarity to Pfam domain PF02374 Anion-transporting ATPase contains similarity to Interpro domain IPR003348 (Anion-transporting ATPase)
39	sas-5	F35B12.5	n/a	chrV 11,611,859	sas-5 encodes a coiled-coil protein whose activity is required, paternally, maternally, and in a dose-dependent manner, for daughter centriole formation; SAS-5 localizes to both the cytoplasm and to centrioles, and photobleaching experiments reveal rapid SAS-5 cycling between these two cellular components throughout the cell cycle; SAS-5 localization to centrioles depends upon the ZYG-1 kinase and the SAS-6 coiled-coil protein, two proteins also required for centriole duplication; in turn, SAS-5 activity is required for SAS-6 centriolar localization, as SAS-6 fails to localize properly in sas-5 mutant embryos.
40	viln-1	C10H11.1	n/a	chrI 4,753,615	C. elegans VILN-1 protein; contains similarity to Pfam domain PF02209 Villin headpiece domain contains similarity to Interpro domains IPR007122 (Gelsolin), IPR003128 (Villin headpiece)
41	B0302.4	B0302.4	n/a	chrX 17,176,549
42	Y65A5A.1	Y65A5A.1	n/a	chrIV 16,399,303	contains similarity to Interpro domain IPR001092 (Basic helix-loop-helix dimerization domain bHLH)
43	srd-56	E04F6.14	n/a	chrII 7,202,553	C. elegans SRD-56 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
44	nlp-13	E03D2.1	n/a	chrV 4,237,211	nlp-13 encodes a predicted neuropeptide of the MSFamide family; expressed primarily in neurons or in the endocrine/secretory cells, and expression includes pharyngeal neurons that modulate pharyngeal pumping of food.
45	srb-7	F37C12.17	n/a	chrIII 7,178,120	C. elegans SRB-7 protein; contains similarity to Pfam domains PF02117 (C.elegans Sra family integral membrane protein) , PF02175 (C.elegans integral membrane protein Srb) contains similarity to Interpro domains IPR001463 (Sodium:alanine symporter), IPR002184 (Serpentine beta receptor), IPR000344 (Nematode chemoreceptor, Sra)
46	EGAP2.2	EGAP2.2	n/a	chrII 5,230,269
47	C53D6.4	C53D6.4	n/a	chrIV 9,020,038	contains similarity to Pfam domain PF00085 Thioredoxin contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR013766 (Thioredoxin domain)
48	srw-139	C44C3.7	n/a	chrV 2,984,742	C. elegans SRW-139 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
49	uev-3	F26H9.7	n/a	chrI 9,311,457	uev-3 encodes a ubiquitin-conjugating enzyme (UBC or E2) variant that contains the UBC motif, but lacks the critical active-site cysteine residue necessary for catalytic activity; as loss of UEV-3 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of UEV-3 in C. elegans development and/or behavior is not yet known; based on similarity to Saccharomyces cerevisiae and human proteins, however, UEV-3 may play a role in cell cycle control or response to stress or DNA damage.
50	C17B7.10	C17B7.10	n/a	chrV 3,341,460	C17B7.10 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; C17B7.10 has no clear orthologs in other organisms.