Affine Alignment
 
Alignment between srd-66 (top Y39A3B.4 323aa) and srd-43 (bottom R04D3.9 332aa) score 2584

013 PIYFLLCSSLFLAMFILIYNFTTPILKPMRFLLYPANAAMTISIPSAFAMQARTLDNEHS 072
    |+ |++       +   |   +   +  ++ +|   +    +    ||  | | + |   
011 PLVFIVSLCFQSTLIYTIIRHSPKNISTLKSILLINSCFQLVQSSMAFFSQVRYVSNLVP 070

073 QALLCDGFCKYIGPNVCL-ICHQLWTTFGMTACVINLHT-MYYRTICLKYLDPKKARWWT 130
      |   | |++    +|    | | |+  ++|  + | | | |+     +|  ||   | 
071 LELWSYGPCRHFEAFICYSTFHVLQTSSLISALTVFLTTFMKYQAAKHVHLSEKKT--WV 128

131 LLYSVHYIFPL--------------GSHILLIFTPSSHEEIHNETLHLH---PEYDYTPY 173
    ++ ++  |  +              |  | |+   +   ||  + + ++    ||     
129 VVCTILAIILVSTLEIKNISANVVNGCAISLVIMQALPLEIRQKYILINQSLDEYSVIGI 188

174 LDFGGFDAFQSIYLGRALMMAIATFYSPIIGNYWKHQAMKMLKVHMSPQTSPAARAMIQT 233
    +|+    +  +  +   |++ +     ||     + + +|+|      ++| |  +  + 
189 VDYSVLPSRINATIVNGLVIIL-----PITCLLLRRKILKLLT--GPDRSSDALHSQNRI 241

234 LMKGLNFQILLPMISYVPQFLMVLFKKYTGQEFPNKQYLGTVLGALPCLLDPMVQIYFIT 293
     ++||  ||    + ||| |+       |  |+   ||   ||  |  ++|| | +||+|
242 FIQGLTLQIFCHTLVYVPIFVCSSISLVTKTEYIFPQYFIFVLPHLTTVIDPAVTMYFVT 301

294 PYRNSIREFLECKS 307
    |||  +  +|  |+
302 PYRKKLIIWLRLKN 315