Affine Alignment
 
Alignment between srd-17 (top Y2H9A.2 339aa) and srd-50 (bottom F15A2.4 337aa) score 3876

007 IWHCIWALLGCSFNLMLIYMAIYKSPKTIRSYATLIINFAVTDFFECALDLFIQIRLMP- 065
    |++  + ||  |  |+|+|+ +    +++      + |     |        +| ||   
015 IFYNAYFLLAISSQLLLLYLMLKCQNRSLHEMRIYLFNILGLQFISTFSAFVLQCRLKRV 074

066 --------APGDVTVIYILNGSCKYISQFACKIGLSLFLPCITHSVWSLLLSFGYRYYIL 117
             |   ||  +  | |||+    |++   +    +     +|+++| ||| +|
075 TLKHFCRIVPSSGTVAMLCYGPCKYLGNIVCEVLFHILQTSLNACATALIIAFYYRYEML 134

118 HYSALTRLKLVK-IVLLILIPSLFQGLTFWTSFAPLEIILPLAKKWFPQYNFEAETGVLT 176
      ++ ||    | +|+   +| +|         +| ++   +|+       +  |   + 
135 TNNSFTRSGHYKQLVISYCVPLVF---LICEVLSPNDVNKLVAELTVLHPTYGLENYAIL 191

177 GIVDITHWAATYAVFNICLPIFPIYIAIFILRQKIITFLGAKTQSMSPDTKAAHSQLLKA 236
    |  |+   ||+     + + ++       + |+|||  | + ++|   +       +++ 
192 GFSDVKTVAASSQTLMLMIGLYGTPFIALVFRKKIIKILHS-SRSYHAEKIVQTKSMIQG 250

237 LTIQAFIPIFMGI-GVIFYLIAQSGLIVSPIVENAIFSIAILMPALSPLTYFYFVRPYRQ 295
    ||+|  +|+     |  +|+ +|     |  || |+     +     ||   |+| |||+
251 LTLQTLLPLICYCPGFTYYIYSQYTQSSSLFVEFAVSPYGFVYTIFDPLLTIYYVLPYRR 310

296 FLKRIF-KNPFKVSAAYV 312
      | || |+    || +|
311 TFKAIFSKHNSTTSATFV 328