Affine Alignment
 
Alignment between ssq-2 (top T28H11.5 405aa) and ssq-4 (bottom T28H11.1 373aa) score 25498

001 MTSAYFGVAGGSNTGAQSAYFGVGGGPAGGGGGASKVGGGAAPPPGTSVYMGAGGGGGGG 060
    ||||||||||| | |||||||||||||||||||    ||| ||||| | |+||| ||   
001 MTSAYFGVAGGGNAGAQSAYFGVGGGPAGGGGGNKSAGGGGAPPPGVSCYLGAGAGGAAS 060

061 GAQSAYFAVGGAPV-----GGAPAAVS-----IGAPPPAGGGGASTMTALGGAPSGASTM 110
    |+||||| ||| ||     |||| | |        || |  ||+|||||+|||| |||||
061 GSQSAYFGVGGGPVGGGGGGGAPPAASNDAGYFATPPAAPAGGSSTMTAVGGAPRGASTM 120

111 TAVGGAP-RGASTMTAVGGVPSGASTMTAVGGAPTGASTMTAVGGAPTGASPMTAFGGAP 169
    |||||||  |+|||||||| |||||||||+|||| |||||||||||| |           
121 TAVGGAPVGGSSTMTAVGGAPSGASTMTAIGGAPRGASTMTAVGGAPMG----------- 169

170 TGASTMTAVGGAPTGASTMTAVGGAPTGASTMTAVGGAPTGASTMTAVGGAPTGASTMTA 229
     | ||||||||||+||||||||||||+|||||||+|||| |||||||||||| |      
170 -GGSTMTAVGGAPSGASTMTAVGGAPSGASTMTAIGGAPRGASTMTAVGGAPMG------ 222

230 VGGVPTGASTMTAIGGAP-SGASTMTAVGGAPRGASTMTAVGGAPTGASTMTAVGAAPGG 288
          |+|||||+||||  |+||||||||||||||||||||||| |||||||+|  |  
223 ------GSSTMTAVGGAPIGGSSTMTAVGGAPRGASTMTAVGGAPGGASTMTAMGGGP-- 274

289 ASTMTAVGGAPRGASTMTAVGAPGGGASALGAAPPAGSM--SGGGGGATSGYFGVGQGVM 346
        +| ||||                      ||+||    |||||||| ||||| | |
275 ----SAFGGAP---------------------PPPSGSAMGGGGGGGATSAYFGVGSGAM 309

347 GGGGAVGQSAYFGVGGGAAGGAKTG---GGGGGGIPGQSMYMGA--GGGGGAGGGATSAY 401
    |||||  ||||||||||  ||   |   |||||||||||+||||  ||||| ||||||||
310 GGGGAGAQSAYFGVGGGPVGGGGGGAKSGGGGGGIPGQSVYMGAGGGGGGGGGGGATSAY 369

402 FAPK 405
    |||+
370 FAPR 373