Affine Alignment
 
Alignment between ssq-4 (top T28H11.1 373aa) and ssq-1 (bottom K07F5.11 290aa) score 20425

001 MTSAYFGVAGGGNAGAQSAYFGVGGGPAGGGGGNKSAGGGGAPPPGVSCYLGAGA-GGAA 059
    ||||||||||| | |||||||||||||||||||    || |||||| | |+|||| ||  
001 MTSAYFGVAGGSNTGAQSAYFGVGGGPAGGGGGASKVGGAGAPPPGTSVYMGAGAGGGGG 060

060 SGSQSAYFGVGGGPVGGGGGGGAPPAASNDAGYFATPPAAPAGGSSTMTAVGGAPRGAST 119
     |+||||| ||| ||     |||| |    |     ||  |||                 
061 GGAQSAYFAVGGAPV-----GGAPAAVPMGA-----PP--PAG----------------- 091

120 MTAVGGAPVGGSSTMTAVGGAPSGASTMTAIGGAPRGASTMTAVGGAPMGGGSTMTAVGG 179
             ||+|||||+||||||||||||+|||||||              ||||||||
092 ---------GGASTMTALGGAPSGASTMTAVGGAPRGA--------------STMTAVGG 128

180 APSGASTMTAVGGAPSGASTMTAIGGAPRGASTMTAVGGAPMGGSSTMTAVGGAPIGGSS 239
    ||+|||||||||||| |||||||+|||| ||||||||||||               | +|
129 APTGASTMTAVGGAPRGASTMTAVGGAPTGASTMTAVGGAP---------------GEAS 173

240 TMTAVGGAPRGASTMTAVGGAPGGASTMTAMGGGPSAFGGAPPPPSGSAMGGGGGGGATS 299
    |||||||||||||||||||          | ||| || | |  ||+||  ||||||||||
174 TMTAVGGAPRGASTMTAVG----------APGGGASALGAA--PPAGSMSGGGGGGGATS 221

300 AYFGVGSGAMGGGGAGAQSAYFGVGGGPVGGGGGGAKSGGGGGGIPGQSVYMGAGGGGGG 359
     ||||| | ||||||  ||||||||||  ||   |   |||||||||||+||||  ||||
222 GYFGVGQGVMGGGGAVGQSAYFGVGGGAAGGAKSG---GGGGGGIPGQSMYMGA--GGGG 276

360 GGGGGATSAYFAPR 373
    | |||||||||||+
277 GAGGGATSAYFAPK 290