Affine Alignment
 
Alignment between srj-50 (top T03D3.2 335aa) and srj-8 (bottom T28A11.9 344aa) score 9272

011 PRVFCALTFLVNPFFVYLIFTEKAAKFGNYRFILLFFATYNLTFSVFNIVFPMDIHTYRY 070
    ||+|   ++++|| |+||  |+   + |||||+|+ || ++| +|    + |+ +    +
012 PRIFGVFSYIINPIFIYLALTKSKTQMGNYRFLLVAFAVFDLFYSTNEFLTPLAVTGNSH 071

071 CFYLMIKDGWFVESTELNFHLLVARCSIVFASNAILLTHFVYRYLVIHESNFTKKYFGWY 130
     | + + +| | |  ||  | +  ||  +  | |+|+ ||||||+ +      + +|   
072 GFVVFLTEGPFFEHPELGAHAISNRCGFISLSYALLIIHFVYRYIALFHPELHRNFFHPI 131

131 IAASFLIFGLFFGV-WYAICYHLARVNIEIRQYIREDFRETYGTDSKNYNMIGVLFQEGS 189
        + +| |  |  |  ||        |||+ ||++|   |  |+++  |+  |+   |
132 GVLIYALFLLIHGASWSVICQQCLGGTDEIRELIRDEFMAEYHADTRDVPMLAALYWNAS 191

190 EETTFRSWIVIILWTSLSVASLISFIILATLIMCKLKKTAMH--VSQATSKFQFELLRAL 247
    +   ||||+ |+| | +|  ++  + +|   || |++    +  +|+ + + | +|   |
192 DAIRFRSWLGIVLLTVISFYAMTIYFVLGYKIMRKIRSMQANSSMSKNSIRLQKKLFLTL 251

248 IVQTIVPICISYSPCLLCWYSPMFGVQLPREVNYFEVSALGIFSFVDPLAIIFCLPPLRK 307
    |+|| +||  |+ | +| ||+|+||+ |          ||  | |+||||+|+ +|  | 
252 IIQTCIPIFASFLPTVLSWYAPIFGIDLSWWNTNVATVALSAFPFIDPLAVIYLVPSYRN 311

308 RIL 310
     ||
312 AIL 314