Affine Alignment
 
Alignment between hda-3 (top R06C1.1 465aa) and hda-2 (bottom C08B11.2 507aa) score 19190

007 KSRVSYYYDGDFGNFYYGQGHPMKPHRVRMTHSLIVNYGLYRKLNVMRPARASFSEITRY 066
    |  |+|||  | |+|+||| ||||| |+ + + |+|+| + + + |+   +   ++|+ +
028 KRNVAYYYHKDVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVF 087

067 HSDDYINFLRNVKSDNMSTFTDQMAR-FSVGEDCPVFDGMYEFCQLSCGGSLAAAARLNR 125
    |++||+|||+ |      |  | + | |++|||||+| |++++| |  |||+  | ||| 
088 HTEDYVNFLQTVTPKLGLTMPDDVLRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNH 147

126 QESEIAINWMGGLHHAKKSEASGFCYSNDIVLAILELLKHHKRVLYIDIDVHHGDGVEEA 185
    + ++| ||| |||||||||||||||| ||||| ||||||+||||||||||+||||||+||
148 KMNDIVINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEA 207

186 FYTTDRVMTVSFHKHGEYFPGTGDLKDVGAGSGKYYALNVPLRDGVDDVTYERIFRTIMG 245
    |  +|||||||||+ |+||||+| + | | | |||+|+||||   + |  | ++| +++ 
208 FNNSDRVMTVSFHRFGQYFPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKLFESVIS 267

246 EVMARFQPEAVVLQCGADSLAGDRLGVFNLTTYGHGKCVEYMKSFNVPLLLVGGGGYTIR 305
     |   | |||+|||||+|||  |||| | |+   | + |+|+||   ||+++||||||+|
268 GVEENFNPEAIVLQCGSDSLCEDRLGQFALSFNAHARAVKYVKSLGKPLMVLGGGGYTLR 327

306 NVSRCWLYETAIALNQEVSDDLPLHDYFDYFIPDYKLHIKPLAALSNFNTPEFIDQTIVA 365
    ||+|||  || + |   + |++|    + ++     |    +  +++ |+  ++      
328 NVARCWALETGVILGLRMDDEIPGTSLYSHYFTPRLLRPNLVPKMNDANSAAYLASIEKE 387

366 LLENLKQLPHVPSVQMQSI-STSCDSIVKTFDEKLIRDHQNDDVRV------TQFEEDVQ 418
     |  |+ +   ||||||+|     | | +  + + ++      +         + ||+  
388 TLACLRMIRGAPSVQMQNIVGIRLDEIEQIEENERLQKSSKSSIEYEVGKVSEKMEEECF 447

419 VEDSAE---FYDGQEP---------ETKNIQSMKRHASPICAAQEEMKKNRID 459
    ||+ ++   |  ||+|         +   +   + |+  |  |+ | +  | |
448 VEEDSKPPSFPPGQDPRRIGQYWGYDRSGLAPPRSHSDVIEEAKYEDRDRRKD 500