Affine Alignment
 
Alignment between ssq-1 (top K07F5.11 290aa) and ssq-4 (bottom T28H11.1 373aa) score 20425

001 MTSAYFGVAGGSNTGAQSAYFGVGGGPAGGGGGASKVGGAGAPPPGTSVYMGAGAGGGGG 060
    ||||||||||| | |||||||||||||||||||    || |||||| | |+|||| ||  
001 MTSAYFGVAGGGNAGAQSAYFGVGGGPAGGGGGNKSAGGGGAPPPGVSCYLGAGA-GGAA 059

061 GGAQSAYFAVGGAPV-----GGAPAAVPMGA-----PP--PAG----------------- 091
     |+||||| ||| ||     |||| |    |     ||  |||                 
060 SGSQSAYFGVGGGPVGGGGGGGAPPAASNDAGYFATPPAAPAGGSSTMTAVGGAPRGAST 119

092 ---------GGASTMTALGGAPSGASTMTAVGGAPRGA--------------STMTAVGG 128
             ||+|||||+||||||||||||+|||||||              ||||||||
120 MTAVGGAPVGGSSTMTAVGGAPSGASTMTAIGGAPRGASTMTAVGGAPMGGGSTMTAVGG 179

129 APTGASTMTAVGGAPRGASTMTAVGGAPTGASTMTAVGGAP---------------GEAS 173
    ||+|||||||||||| |||||||+|||| ||||||||||||               | +|
180 APSGASTMTAVGGAPSGASTMTAIGGAPRGASTMTAVGGAPMGGSSTMTAVGGAPIGGSS 239

174 TMTAVGGAPRGASTMTAVG----------APGGGASALGAA--PPAGSMSGGGGGGGATS 221
    |||||||||||||||||||          | ||| || | |  ||+||  ||||||||||
240 TMTAVGGAPRGASTMTAVGGAPGGASTMTAMGGGPSAFGGAPPPPSGSAMGGGGGGGATS 299

222 GYFGVGQGVMGGGGAVGQSAYFGVGGGAAGGAKSG---GGGGGGIPGQSMYMGA--GGGG 276
     ||||| | ||||||  ||||||||||  ||   |   |||||||||||+||||  ||||
300 AYFGVGSGAMGGGGAGAQSAYFGVGGGPVGGGGGGAKSGGGGGGIPGQSVYMGAGGGGGG 359

277 GAGGGATSAYFAPK 290
    | |||||||||||+
360 GGGGGATSAYFAPR 373