Affine Alignment
 
Alignment between F14B4.3 (top F14B4.3 1127aa) and rpb-2 (bottom C26E6.4 1193aa) score 21527

0010 VDSFDFLVSKGCQFAAQAVPAEKFR---------LKNGDAVTMKFTSAQLHKPTLDTGAK 0060
     +||||  |    |   +  |  + +         ++|    ++||    | ||   |  +
0051 LDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKP---THWE 0107

0061 LTSDTLPLLPAECRQRGLTYAGNLKVGID--VHVNGSRLDII--EIILGKVPIMLRSEGC 0116
          +|++| | | | ||||  | | |   |  + |  + +  ++ +||||+||||  |
0108 KDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYC 0167

0117 HLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFS 0176
      |  |+ ++|    | |++ ||||++||||||   |||  +     +   + |+ ||   
0168 MLSNMTDRDLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKD-GKY-- 0221

0177 EFGVMMRSVKENHTAVMMTL--HYLDTG------------TMQLALQFRREIFYVPLMYI 0222
      |    ||  || +    |+  + |  |             + +    ++||   |+| +
0222 AFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEI---PIMIV 0278

0223 VKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQE--AAIRAIGSRFRV 0280
      +||   +|  |      |     |    ++ |+    +|  + ||   |+  ||+|   
0279 FRALGFVSDRDI-----LGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAK 0333

0281 AVSDRVAPWEDDLEAGRFIIRECVLIHLDSDE----EKFHTLAYMTQKLIALVKGECAPE 0336
         |    |  ++  | |+++ +| |+   |    +|   + ||  +|+    |    +
0334 PGVTR----EQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELD 0389

0337 TPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLE-YMSSRKDFILTSAAILKALGNH 0395
       |+   +   ++| +|  + |    |++  +|   + |++   || |            
0390 DRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCV-------- 0441

0396 TGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEM 0455
         ||||+ | |||||   +   | |  +| | +  |+     +|| |  +      | 
0442 KTSTITRGLTYSLATGNWGDQ-KKAHQSRAGVSQVLNRLTYTATLSHLRRAN-SPIGREG 0499

0456 RTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYT 0515
     +    |+|    || +||  ||+|   ||+ ++     ++  +|  |    +|  |  ++
0500 KLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLA----LMAYISVGSLPEPILEFLEEWS 0555

0516 HKTVALAPPG--EELYPVLMNGRFLGY--VPITKAASIERYLRCAKVAKDARIPYTSEIA 0571
      + +    |    +   + +|| ++|    |     ++++  |   +         ||++
0556 MENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDI-------IVSEVS 0608

0572 LVRRSTDIKNIQTQYPGIYILSDAGRLIRPV-----RNLAM------------------- 0607
     +||   ||++ +     | | +||||+ ||+     + ||+                   
0609 MVR---DIRDRE-----IRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYT 0660

0608 -------DAVEHIGTFEQVYLSVVLDPEEAEPG----VTMHQELHPSCLFSFAGNLIPFP 0656
              || | + |+    + + ||+   |       | |+||+ +     ++||||
0661 WSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFP 0720

0657 DHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPL 0716
     |||||||| ||  |||| ||     +| | |   + | +||+|++   + |    +| | 
0721 DHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPA 0780

0717 GTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVT-ERERKTIFYRNPR 0775
     | || ||++||+||+ ||++ +| ++  ||       +  | |    +   + +  +  |
0781 GINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTR 0840

0776 EEIK--------TVGPDGLPIPGRRYFLDEVYY--------VTFNMETGDFRTHK---FH 0816
     |+           +  ||+  || |   |+|          +  +++    +  |     
0841 EKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDAST 0900

0817 YAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESL 0876
     +   +  |+|  |       | |   |+ |  | | |||||||||||||    ++  | +
0901 FLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDM 0960

0877 PFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHF 0936
     ||+  |+ |||| |||  ||||||| +|| + || +|  ||  ||+||    |   +   
0961 PFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPF---NDTVNVQKI 1017

0937 GELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPIT 0996
       || + ||+  |||  |+|  |+++  |||||  |||||+||+ ||   || |||  + 
1018 SGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMN 1077

0997 HQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMS 1056
      ||++|| + ||+||||||||  |+|| +  |++||   ||    | |  ||  | |+ +
1078 RQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCG--LIVVAN 1135

1057 SRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKL 1116
      |                  | +  |+ |    ||  +++|   + |  || +|++  +|
1136 LR------------------TNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1177

1117 GIE 1119
      ++
1178 MVK 1180