Affine Alignment
 
Alignment between prg-1 (top D2030.6 824aa) and F55A12.1 (bottom F55A12.1 892aa) score 4161

189 ILPGYETAIRMYEENFMLCVENRFKMVREESMYILFHKELRSCQ--------------NN 234
    + || + ||+  |  +     |   ++  + |   ||||    |              ||
251 LYPGLKKAIQFIEGPYGRGQNNPSVVI--DGMKAAFHKEQTVIQKLYEITGQDPSNGINN 308

235 PQRVQEKMNEMYGGTTIITRYNNKLHRYTRLD----YSISPLSEFVKDGQSITLKEYFKN 290
      |  ||   +  |    + | |+  |+ |++     | |     + ||++ ++ ||+ +
309 MAR--EKAAAVMKGLDCYSTYTNR-KRHLRIEGIFHESASKTRFELPDGKTCSIAEYYAD 365

291 QYGIEITVDDQPIIISEGKPKQPGEPPQVSYIV--PELCFPTGLTDEMRKDFKMMKEIAK 348
    +| | +   +  +++ + +      | ++  |     +  |    ++ +   |  || | 
366 KYKITLQYPNANLVVCKDRGNNNYFPAELMTISRNQRVTIPQQTGNQSQ---KTTKECA- 421

349 HTRMSPQQRLVESRKLIVDLSKNEKVMECFKYWGISLGQDLANVQARVLKSEPLQGKKTY 408
          +||++ + |  |++|   +++      || +  +   |+|| |  + |  +++ 
422 -VLPDVRQRIIITGKNAVNISLENELLVAL---GIKVYSEPLMVEARELDGKELVYQRSV 477

409 EGKQAEWARGVKECGIYRGSNMTNWIVIGPGSGNSGLLSQKFIEEARRLGKILQVQLGEP 468
      +  +| |      +        | +     || |                 +   |+|
478 MSEMGKW-RAPPGWFVKPAKVPELWALY--AVGNQG----------------CRFSSGDP 518

469 MCVPIRGISPNDYLEGVKGAIKQVDGEDIHMLVVMLADDNKTRYDSLKKFLCVECPIPNQ 528
     |    |+   |    +   +++|        |+++ ||  |      | |  +  +  |
519 PCE--TGLFHTD---KIMDQLEKVAASGC-KYVLVITDDAITHLHKRYKALEQKSRMTIQ 572

529 CVNLRTLAGKSKDGGENKNLGSIVLKIVLQMICKTGGALWKVNIPLKNTMIVGYDLYHDS 588
     + +       || |+   | +|+ |  |    | ||  + |+           |     
573 DMKISKANAVVKD-GKRLTLENIINKTNL----KLGGLNYTVS-----------DSKKSM 616

589 TLKGKTVGACVSTTSNDFTQFYSQTRPHENPTQLG---NNLTH------FVRKALKQ--- 636
    | +   +|  ||      |+|    + | ||  +|   | + +      ||     |   
617 TDEQLIIGVGVSAPPAG-TKFMMDNKGHLNPQIIGFASNAVANHEFVGDFVLAPSTQDTM 675

637 ------------YYDSNDQTLPSRLILYRDGAGDGQIPYIKNTEVKLVRDACDAVTDKAA 684
                 ++|+ +||| |+|+|| || +|    |   |+ | |           
676 ASIEDVLQNSIDLFESSRKTLPKRIIIYRSGASEGSHASILAYEIPLAR----------- 724

685 ELSNKVQEKIKLAFIIVTKRVNMRILK---QGSSLDNAINPQPGTVVDTTVTRPERMDFY 741
     + +   + ||| +|+|||  | |  +   +       +|  || |+|  || |    |+
725 AIIHGYSKDIKLIYIVVTKEHNYRFFRDQLRSGGKATEMNIPPGIVLDNAVTNPACKQFF 784

742 LVPQFVNQGTVTPVSYNIIHDDTDLGPDKHQQLAFKLCHLYYNWQGTVRVPAPCQYAHKL 801
    |      |||     | ++ ||     |+ ++| | ||| +     +  +| |   |++ 
785 LNGHTTLQGTAKTPLYTVLADDCAAPMDRLEELTFTLCHYHQIVALSTSIPTPLYVANEY 844

802 A 802
    |
845 A 845