Affine Alignment
 
Alignment between str-248 (top C55A1.3 360aa) and srj-44 (bottom T03D3.11 350aa) score 4427

011 RTCAFLGLFNNSILALLILYKSPKKLGNYKYLMMYISIFEIIYSLLDFSTVPEIFSKDSA 070
    ||   |    | |   ||  +   | |||+||++| +|| ++||+++     +| +   +
012 RTFCALTFLVNPIFIYLIFSEKSSKFGNYRYLLLYFAIFNLLYSIMNVLVPLDIHTFGYS 071

071 FLITIEKRLAVLPDIALQFALSEFPVKCRLLKFEISVVFCSLFGMSMAIFAIHFVYRYLV 130
    | + +          + |            | | + +   |    | |+   ||+|||||
072 FFLIVRHGWFQTEGNSSQ------------LNFHMLIARTSSVSSSYAVLMSHFIYRYLV 119

131 MTGSHFIKTRHLLKVISLIGFTLCIGVVWSFLCILFHPIPQADLI--LTQEYLKPRNLQL 188
    ++ |   +      +   +        ||   |  |     ++|+  +++++ +   +  
120 ISDSSLTRHHFHWFMTGSVYMLFAYFSVWHATC-YFPGKANSELLEYVSEDFQENFGMDS 178

189 AEIDYLGPCFQVQDEKGVYHLNWDAAGPIGIMTVLIGLSFITVFYCGYSIYRNIKSMAAM 248
      ++ +|  | |    | +     |   + | + +   | || |     + | ++ |   
179 RNLNVIGTLFSV----GSHETTLRAWTAMSIWSTISIASIITFFVMAGLVMRKLRKMTVR 234

249 RSSVDHSLQSQLFYALVFQTLIPVILMHIPASLGFLFSMFGQSI-LFFGELPTFSVFLYP 307
     |      | +|  ||+ ||+ |+     |  | +   +||  +  +   |   ++ |+ 
235 TSQKTSQFQFELLRALIVQTVTPICFSFSPCLLCWYSPIFGIKLDRWLNYLEVTALGLFS 294

308 ILDPLPNFFIIRSYRQAILDFFGCFLRKPSPNSSNNQS 345
     +||+     +  +|  | +   |  |  + | |+| |
295 FMDPIAIILCLPIFRYRIFNVINCIARACAKNQSDNDS 332