Affine Alignment
 
Alignment between nhr-257 (top C17A2.1 331aa) and nhr-135 (bottom VC5.5 362aa) score 3268

007 PCRICNDPETTSPHFG--AIVCTACASFFGRTTV---DKFRCIANNKCVISCAKKITCRS 061
    || +|| |     |||  + +| ||++|| |  +      +|  +  | |       || 
005 PCFVCNSP-ANECHFGSRSQICRACSAFFRRYVLSPKSAIKCRKDKSCRIHYKDPKICRF 063

062 CRYDSCIRAGMNKFYIRKIKAPKQQVIQEVDQNKTFPNSEMLPNFTRENSHKFSEVLNLP 121
    || + |+ |||       ++ |+++  ++   ++|       | +| |     |   ++|
064 CRMERCVLAGMK---TTAVQPPREKYSEDRGDSETSSCYSSSP-YTHEVQ---SCSRDIP 116

122 NNEILQFYVKEVEKSLSLKKRN----FSKNILNAESI--NDLLIISAHLTGSAMESCFQC 175
        |  + | +|    |+ +|     |+|++    |   |+ ++|  + |+  |     
117 RLHRLSVHFKNLESVRKLEFQNQEPPKSRNMVELIEILKKDMRLVSTFIDGAYPE----I 172

176 PGINLLEKEDIQVFLRYF--------EFSNVWIDSLREYSLMSHSHNKE-----ISRTDK 222
      +  |||+  |||| +|         | ++     +|  | +  |  |      |  + 
173 GKLGHLEKK--QVFLNFFIKYMLVEPPFLSI-SAGRKEMMLPNGDHYDEDLGAFYSTINV 229

223 KVMKFI-------NQVKSTLGTALIHLKLNIYEFAAFKSFCIWNIKFHKTSQTMRIVAQG 275
    |  + +       ++ | |+   +  || ++|||       +|+      |     + + 
230 KKEEAVHLFKPYWDEYKRTVIDDVSFLKPDVYEFLTVSGLILWDTGLDGLSDQSIEICRA 289

276 HYVAVSSALRVYYKNQLKLSDMEIAIRIGDITLQIATV 313
        +   +  ||||  || |    +|+| | + +++|
290 MREKLVGEIHFYYKNVKKLDDP--CLRLGQIMMILSSV 325