Affine Alignment
 
Alignment between gck-4 (top C04A11.3 1228aa) and nhr-229 (bottom Y116A8C.18 345aa) score 2052

0831 QRKQQLHDLRRLQRDEARQKQELQAEGIKLVEEQARKFTSEQTNL--------TRTSELE 0882
     ++ + +|+   |++||   | +   +    +++    |  |  ||        || + ||
0036 KQPKNIHEDCELKQDELISKLQHSQQNFDNIKKILANFEKENENLADENEILKTRVAILE 0095

0883 MDAMERRQ-RKEIEDTEGAQEHELRNAQKRLRIEQEKDMRAFKERLKQEMKIFKQELTML 0941
      |  | |   |  ++      +||+ +++ +    || ++  |  ||+|    |  || +
0096 KDVKEERNATKMAKNLNEEIVNELKLSEELIDC-LEKQLQESKIELKEEKLSKKHLLTTM 0154

0942 SKVQRKDALKQRKEQI------EIEHQLKEKDFLMQLQQNAEAMLQRMAEKHKERMASIE 0995
       ++ +   ++ | +|      |++ ++|| +     ++| |  |+|   |   ++   |
0155 KSLETEKMEQEHKTKIMNKEVEELKIRVKELEATDYSEKNIE--LERQVGKLTAQLQDFE 0212

0996 KQFLMQKHNLLRAKENNIWELEDKQMREKFVLHRKLFKDEYYLLRTQMLARHQREMAQIE 1055
          ++  +|   |       |||+++   |  ||                  |+ ++ 
0213 SSRGYEQELILSLLEFQ-KRKSDKQLKD---LQSKL--------------ERNLELVELN 0254

1056 KIHQEEEDDLIRALTLDRKKLPKMLRSETKTRSVMFKESLRISAVNMSNAEMQERIRRFD 1115
     |+|+| + +             ++|+||     |  | +  | +|  ||+ + |+  +|+
0255 KLHEEVQSE-------------RLLKSE-----VAEKLAELIKSVKTSNSMLLEKTTQFE 0296

1116 EQEALR 1121
     + +  |
0297 DAQGSR 0302