Affine Alignment
 
Alignment between sre-5 (top B0212.2 392aa) and sre-41 (bottom Y57A10B.5 360aa) score 2299

060 YHRNLAMIVEQLPNQYFPSLLARMYMIYKQLTI----------------SNTADLI---- 099
    +| |  +++     |+| ++||++ ++  |+ +                |   |++    
060 FHENKNILMAFFLCQWFEAILAKILILPYQIGLIQIGNSPGKSYFSWWSSGRNDMVLVES 119

100 -EDQGFLF-AVWLRNSLLFVAFYFAPFPVIERCFATLYMHDYETNKRRWISYLLSTILYI 157
     +|   |+ | ++    +|  |+      +||  || |+||||  +|| |  +|  ++ |
120 TDDIRVLYIACYVYRHYMFSMFFGIMAIGVERACATFYIHDYEHVRRRHIPVILIILVNI 179

158 FAITSAQFFIFGSSNREIHIFLITGFNLIAFGLT----FVMERYNKKRYSKLRKNV--NS 211
      |    | |    +  |   ++ |   +   |+      + | |    +++|||+  + 
180 ITIPYVYFVI----HNRIPFLVVYGQWAVCIVLSTSAYATILRINFVFRNQMRKNITDHE 235

212 DYSLSVRAQLSENINS---------------TLPFKVM-CFSIAFFASLCTSMLHVDEWT 255
     |||+ + |+ ||| |               +|   |  |  + ||  |    +|+    
236 KYSLARKFQVEENIRSLKLAKYTVLVGSVHISLTLLVFTCLMLGFFERLQVFFVHI---L 292

256 ESQTIRNWVYMAFNFSCWSYGTLVPFFMLAYNPLWQKELRRLGGKFCCCLCPANRIGADQ 315
    |+  +   + ||    | |         +|+   + ++|  ||      +   +|||  +
293 ENLILLPALVMAVALLCCS---------VAWRHEFMQKLPVLGKH----ISGTSRIGISE 339

316 TGRKRPPTKVKDTFGKNCNVEDAEHTTIYFSQLNADWN 353
    + |                | ++|   +|| || + ||
340 SRRS--------------VVLESE---VYFQQLRSSWN 360