Human Gene ZC3H13 (ENST00000679008.1_9) from GENCODE V47lift37
  Description: zinc finger CCCH-type containing 13, transcript variant 15 (from RefSeq NM_001382214.1)
Gencode Transcript: ENST00000679008.1_9
Gencode Gene: ENSG00000123200.17_17
Transcript (Including UTRs)
   Position: hg19 chr13:46,528,600-46,626,881 Size: 98,282 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr13:46,531,262-46,619,642 Size: 88,381 Coding Exon Count: 18 

Page IndexSequence and LinksPrimersCTDGene AllelesMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:46,528,600-46,626,881)mRNA (may differ from genome)Protein (1669 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -144.30352-0.410 Picture PostScript Text
3' UTR -569.302662-0.214 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  AK074924 - Homo sapiens cDNA FLJ90443 fis, clone NT2RP3001061, highly similar to Zinc finger CCCH domain-containing protein 13.
AB020660 - Homo sapiens mRNA for KIAA0853 protein, partial cds.
AK001815 - Homo sapiens cDNA FLJ10953 fis, clone PLACE1000380, highly similar to Zinc finger CCCH domain-containing protein 13.
AB384536 - Synthetic construct DNA, clone: pF1KA0853, Homo sapiens ZC3H13 gene for zinc finger CCCH-type containing protein 13, complete cds, without stop codon, in Flexi system.
AL136745 - Homo sapiens mRNA; cDNA DKFZp434D1812 (from clone DKFZp434D1812).
AY283618 - Homo sapiens hypothetical protein mRNA, complete cds.
BC157032 - Synthetic construct Homo sapiens clone IMAGE:100063350, MGC:190754 zinc finger CCCH-type containing 13 (ZC3H13) mRNA, encodes complete protein.
BC156055 - Synthetic construct Homo sapiens clone IMAGE:100062342, MGC:190471 zinc finger CCCH-type containing 13 (ZC3H13) mRNA, encodes complete protein.
AK056422 - Homo sapiens cDNA FLJ31860 fis, clone NT2RP7001306, weakly similar to U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA.
AL831833 - Homo sapiens mRNA; cDNA DKFZp547M0114 (from clone DKFZp547M0114).
AK092988 - Homo sapiens cDNA FLJ35669 fis, clone SPLEN2018157.
AX747840 - Sequence 1365 from Patent EP1308459.
BC032425 - Homo sapiens zinc finger CCCH-type containing 13, mRNA (cDNA clone IMAGE:5399561), partial cds.
BC050658 - Homo sapiens KIAA0853, mRNA (cDNA clone IMAGE:6148621).
BC062685 - Homo sapiens KIAA0853, mRNA (cDNA clone IMAGE:6714213).
BC107864 - Homo sapiens zinc finger CCCH-type containing 13, mRNA (cDNA clone IMAGE:6106105), partial cds.
JD228442 - Sequence 209466 from Patent EP1572962.
JD513219 - Sequence 494243 from Patent EP1572962.
JD056675 - Sequence 37699 from Patent EP1572962.
JD045904 - Sequence 26928 from Patent EP1572962.
BC019000 - Homo sapiens zinc finger CCCH-type containing 13, mRNA (cDNA clone IMAGE:3607400), partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A7I2V4I5, A0A7I2V4I5_HUMAN, NM_001382214, uc330ewj.1, uc330ewj.2, ZC3H13
UCSC ID: ENST00000679008.1_9
RefSeq Accession: NM_001330564.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.