Human Gene WWP1 (ENST00000517970.6_4) from GENCODE V47lift37
  Description: WW domain containing E3 ubiquitin protein ligase 1 (from RefSeq NM_007013.4)
Gencode Transcript: ENST00000517970.6_4
Gencode Gene: ENSG00000123124.14_8
Transcript (Including UTRs)
   Position: hg19 chr8:87,354,776-87,480,732 Size: 125,957 Total Exon Count: 25 Strand: +
Coding Region
   Position: hg19 chr8:87,386,280-87,479,122 Size: 92,843 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:87,354,776-87,480,732)mRNA (may differ from genome)Protein (922 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WWP1_HUMAN
DESCRIPTION: RecName: Full=NEDD4-like E3 ubiquitin-protein ligase WWP1; EC=6.3.2.-; AltName: Full=Atrophin-1-interacting protein 5; Short=AIP5; AltName: Full=TGIF-interacting ubiquitin ligase 1; Short=Tiul1; AltName: Full=WW domain-containing protein 1;
FUNCTION: E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Ubiquitinates ERBB4 isoforms JM-A CYT-1 and JM-B CYT-1, KLF2, KLF5 and TP63 and promotes their proteasomal degradation. Ubiquitinates RNF11 without targeting it for degradation. Ubiquitinates and promotes degradation of TGFBR1; the ubiquitination is enhanced by SMAD7. Ubiquitinates SMAD6 and SMAD7. Ubiquitinates and promotes degradation of SMAD2 in response to TGF-beta signaling, which requires interaction with TGIF.
ENZYME REGULATION: Activated by NDFIP1- and NDFIP2-binding.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Binds KLF2 AND HIVEP3 (By similarity). Binds SCNN1A, SCNN1B, SCNN1G, WBP1, WBP2, DRPLA and adenovirus type 2 PIII. Interacts with RNF11 (By similarity). Interacts with SPG20. Interacts with ERBB4 isoforms JM-B CYT-1 and JM-A CYT-1. Interacts with SMAD1, SMAD2, SMAD3, SMAD5, SMAD6, SMAD7, TGFBR1 AND TGFBR2. Associates with the TGFBR1:TGFBR2 receptor complex in presence of SMAD7. Interacts with SKIL isoform 1. Interacts with TP63 isoform 1 and isoform 2. Interacts with STAMBP and RNF11. Interacts with NDFIP1 and NDFIP2 (Probable); this interaction activates the E3 ubiquitin-protein ligase. Interacts with TGIF.
INTERACTION: Q16630:CPSF6; NbExp=3; IntAct=EBI-742157, EBI-358410;
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cell membrane; Peripheral membrane protein (By similarity). Nucleus (By similarity).
TISSUE SPECIFICITY: Detected in heart, placenta, pancreas, kidney, liver, skeletal muscle, bone marrow, fetal brain, and at much lower levels in adult brain and lung. Isoform 1 and isoform 5 predominate in all tissues tested, except in testis and bone marrow, where isoform 5 is expressed at much higher levels than isoform 1.
PTM: Auto-ubiquitinated and ubiquitinated by RNF11.
SIMILARITY: Contains 1 C2 domain.
SIMILARITY: Contains 1 HECT (E6AP-type E3 ubiquitin-protein ligase) domain.
SIMILARITY: Contains 4 WW domains.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org//Genes/WWP1ID42993ch8q21.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: WWP1
Diseases sorted by gene-association score: troyer syndrome (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • D000082 Acetaminophen
  • C023514 2,6-dinitrotoluene
  • C028451 3,4,3',4'-tetrachlorobiphenyl
  • C472791 3-(4'-hydroxy-3'-adamantylbiphenyl-4-yl)acrylic acid
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D015127 9,10-Dimethyl-1,2-benzanthracene
  • D000393 Air Pollutants
  • D019256 Cadmium Chloride
  • D019327 Copper Sulfate
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.13 RPKM in Muscle - Skeletal
Total median expression: 438.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -260.70498-0.523 Picture PostScript Text
3' UTR -338.701610-0.210 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000008 - C2_Ca-dep
IPR008973 - C2_Ca/lipid-bd_dom_CaLB
IPR018029 - C2_membr_targeting
IPR024928 - E3_ub_ligase_SMURF1
IPR000569 - HECT
IPR001202 - WW_Rsp5_WWP

Pfam Domains:
PF00168 - C2 domain
PF00397 - WW domain
PF00632 - HECT-domain (ubiquitin-transferase)

SCOP Domains:
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
51045 - WW domain
56204 - Hect, E3 ligase catalytic domain
54452 - MHC antigen-recognition domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1ND7 - X-ray MuPIT 2OP7 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9H0M0
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0061630 ubiquitin protein ligase activity

Biological Process:
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0007165 signal transduction
GO:0007417 central nervous system development
GO:0016032 viral process
GO:0016567 protein ubiquitination
GO:0034220 ion transmembrane transport
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045892 negative regulation of transcription, DNA-templated
GO:0046718 viral entry into host cell

Cellular Component:
GO:0000151 ubiquitin ligase complex
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  KJ893213 - Synthetic construct Homo sapiens clone ccsbBroadEn_02607 WWP1 gene, encodes complete protein.
AY345857 - Homo sapiens TGIF-interacting ubiquitin ligase 1 mRNA, complete cds.
AK292800 - Homo sapiens cDNA FLJ75827 complete cds, highly similar to Homo sapiens WW domain containing E3 ubiquitin protein ligase 1 (WWP1), mRNA.
BC036065 - Homo sapiens WW domain containing E3 ubiquitin protein ligase 1, mRNA (cDNA clone MGC:33686 IMAGE:5296005), complete cds.
AY043361 - Homo sapiens WW domain-containing protein 1 mRNA, complete cds.
AL136739 - Homo sapiens mRNA; cDNA DKFZp434D2111 (from clone DKFZp434D2111).
AB590063 - Synthetic construct DNA, clone: pFN21AB8007, Homo sapiens WWP1 gene for WW domain containing E3 ubiquitin protein ligase 1, without stop codon, in Flexi system.
EU832359 - Synthetic construct Homo sapiens clone HAIB:100067388; DKFZo004A0128 WW domain containing E3 ubiquitin protein ligase 1 protein (WWP1) gene, encodes complete protein.
EU832274 - Synthetic construct Homo sapiens clone HAIB:100067303; DKFZo008A0127 WW domain containing E3 ubiquitin protein ligase 1 protein (WWP1) gene, encodes complete protein.
AK310683 - Homo sapiens cDNA, FLJ17725.
U96113 - Homo sapiens Nedd-4-like ubiquitin-protein ligase WWP1 mRNA, partial cds.
CU690282 - Synthetic construct Homo sapiens gateway clone IMAGE:100017845 5' read WWP1 mRNA.
JD061839 - Sequence 42863 from Patent EP1572962.
JD083959 - Sequence 64983 from Patent EP1572962.
BC015380 - Homo sapiens WW domain containing E3 ubiquitin protein ligase 1, mRNA (cDNA clone IMAGE:3893943), partial cds.
AL050082 - Homo sapiens mRNA; cDNA DKFZp566J2446 (from clone DKFZp566J2446).
JD123627 - Sequence 104651 from Patent EP1572962.
JD258601 - Sequence 239625 from Patent EP1572962.
JD456265 - Sequence 437289 from Patent EP1572962.
JD467525 - Sequence 448549 from Patent EP1572962.
JD166120 - Sequence 147144 from Patent EP1572962.
JD525892 - Sequence 506916 from Patent EP1572962.
JD300318 - Sequence 281342 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9H0M0 (Reactome details) participates in the following event(s):

R-HSA-9008036 RUNX2 binds to HIVEP3 and WWP1
R-HSA-9008076 WWP1 polyubiquitinates RUNX2
R-HSA-1253300 ERBB4 binds WWP1/ITCH ubiquitin ligases
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-1253282 ERBB4 ubiquitination by WWP1/ITCH
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-2682349 RAF1:SGK:TSC22D3:WPP ubiquitinates SCNN channels
R-HSA-8939902 Regulation of RUNX2 expression and activity
R-HSA-1253288 Downregulation of ERBB4 signaling
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-8878166 Transcriptional regulation by RUNX2
R-HSA-1236394 Signaling by ERBB4
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-212436 Generic Transcription Pathway
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-2672351 Stimuli-sensing channels
R-HSA-1280218 Adaptive Immune System
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-162582 Signal Transduction
R-HSA-983712 Ion channel transport
R-HSA-168256 Immune System
R-HSA-74160 Gene expression (Transcription)
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000517970.1, ENST00000517970.2, ENST00000517970.3, ENST00000517970.4, ENST00000517970.5, NM_007013, O00307, Q5YLC1, Q96BP4, Q9H0M0, uc323qfw.1, uc323qfw.2, WWP1_HUMAN
UCSC ID: ENST00000517970.6_4
RefSeq Accession: NM_007013.4
Protein: Q9H0M0 (aka WWP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.